Resequencing analysis for Gene: LRRC16B (C14orf121)


There are 3 sections to this alignment:
  - resequencing alignment (unspliced, by construction)
  - Our alignments (spliced for coding sequence)
  - Alignments of ref. [2] (spliced for coding sequence)

Note that:
  - these alignments should be taken in context with whole protein alignment. Spliced alignments may be interrupted by splicing events.
  - Putative signal of positive selection is shown in blue.

                    .... ....|1... ....|2... ....|3... ....|4... ....|5... ....|6... ....|7... ....|8... ....|9... ....|10.. ....|11.. ....|12.. ....|13.. ....|14.. ....|
reseq__G1_humanF72  GGAAACCAGGACTGACCACTGCATGGTGAGTCTGGGCCCCTGTCCTGGCTCACCTGTTTTTGTTATATATTAT-GGCCAAGCCCAGCGTGGAGCTCACCCGCGAGTTGCAAGGTACGAGGCTGCCTCGGTCTCTGGGACGCCCCGTCCGG
reseq__G1_humanF60  GGAAACCAGGACTGACCACTGCATGGTGAGTCTGGGCCCCTGTCCTGGCTCACCGGTTTGAGTTATATA--TTTGGCCAAGCCCAGCGTGGAGCTCACCCGCGAGTTGCAAGGTACGAGGCTGCCTCGGTCTCTGGGACGCCCCGTCCGG
reseq__G1_humanF48  GGAAACCAGGACTGACCACTGCATGGTGAGTCTGGGCCCCTGTCCTGGCTCACCTGTTTGTGTTATATAG-TTCTGTCAAGCCCAGCGTGGAGCTCACCCGCGAGTTGCAAGGTACGAGGCTGCCTCGGTCTCTGGGACGCCCCGTCCGG
reseq__G1_humanF36  GGAAACCAGGACTGACCTCTGCATGGTGAGTCTGGGCCCTTGTCCTGGCTCGCTGGTTTGAGTAATATT--TTTGGCCAAGCCCAGCGTGGAGCTCACCCGCGAGTTGCAAGGTACGAGGCTGCCTCGGTCTCTGGGACGCCCCGTCCGG
reseq__G1_humanF24  GGAAACCAGGACTGACCTCACCATGGTGAGTCTGGGCCCCTGTCAGGGCTCGCCGGTTGGAGCTATAGAGTATCTGCCAAGCCCAGCGTGGAGCTCACCCGCGAGTTGCAAGGTACGAGGCTGCCTCGGTCTCTGGGACGCCCCGTCCGG
reseq__G1_chimpF96  ----------------------------------------------------------GAAGCGGTATAATGTCAGCCAAGCCCAGCGTGGAGCTCACCCGCGAGTTGCAAGGTACGAGGCTGCCTCGGTCTCTGGGACGCCCCGTCCGG
reseq__G1_chimpF84  ---------------------------------------------------ATCACTTGAGGCCA---AGAGTCTGCCAAGCCCACCGTGGAGCTCACCCGCGAGTTGCAAGGTACGAGGCTGCCTCGGTCTCTGGGACGCCCCGTCCGG
reseq__G1_chimpF72  --------------------------------------------------------------------------TGCCAAGCCCAGCGTGGAGCTCACCCGCGAGTTGCAAGGTACGAGGCTGCCTCGGTCTCTGGGACGCCCCGTCCGG
reseq__G1_chimpF60  ----------------------------------------------------------------GT-----TT-TGCCAAGCCCAGCGTGGAGCTCACCCGCGAGTTGCAAGGTACGAGGCTGCCTCGGTCTCTGGGACGCCCCGTCCGG
reseq__G1_chimpF48  --------------------------------------------AAGGGTCGGACAGGTTGGCAATA---TCT-GGCCAAGCCCACCGTGGAGCTCACCCGCGAGTTGCAAGGTACGAGGCTGCCTCGGTCTCTGGGACGCCCCGTCCGG
reseq__G1_chimpF36  ----------------------------------------------------------------------TTT-TGCCAAGCCCAGCGTGGAGCTCACCCGCGAGTTGCAAGGTACGAGGCTGCCTCGGTCTCTGGGACGCCCCGTCCGG
reseq__G1_chimpF24  ---------------------------------------GAGGCTGACGCAGGAAGGTGCAGCAGT-----TT-GGCCAAGCCCAGCGTGGAGCTCACCCGCGAGTTGCAAGGTACGAGGCTGCCTCGGTCTCTGGGACGCCCCGTCCGG
reseq__G1_chimpF12  ------------------------------------------------------------------------T-TGCCAAGCCCAGCGTGGAGCTCACCCGCGAGTTGCAAGGTACGAGGCTGCCTCGGTCTCTGGGACGCCCCGTCCGG
# Our alignments (spliced for proteins)
human_dna           ------------------------------------------------------------------------ATGGCCAAGCCCAGCGTGGAGCTCACCCGCGAGTTG------------------------------------------
chimp_dna           ------------------------------------------------------------------------ATGGCCAAGCCCAGCGTGGAGCTCACCCGCGAGTGC------------------------------------------
macaque_dna         ------------------------------------------------------------------------ATGGCCAAGCCAAGCGTGGAGCTCACCCGCGAGTTG------------------------------------------
# Ref.[2] alignments (spliced for proteins)
hg18                ------------------------------------------------------------------------ATGGCCAAGCCCAGCGTGGAGCTCACCCGCGAGTTGCAA---------------------------------------
panTro2             ------------------------------------------------------------------------ATGGCCAAGCCCAGCGTGGAGCTCACCCGCGAGTGCAAG---------------------------------------
rheMac2             ------------------------------------------------------------------------ATGGCCAAGCCCAGCGTGGAGCTCACCCGCGAGTTGCAA---------------------------------------

                    15.. ....|16.. ....|17.. ....|18.. ....|19.. ....|20.. ....|21.. ....|22.. ....|23.. ....|
reseq__G1_humanF72  GAGCATCCCAGACCCAGCGCGTTCCTCCCCGTGGTGCATCCCAGCCCGGTGTCTCACACCCCTCACCCCA-TGCTCAGTCACTG------
reseq__G1_humanF60  GAGCATCCCAGACCCAGCGCGTTCCTCCCCGTGGTGCATCCCAGCCCGGTGTCTCACACCCCTCACCCCAGCTCCGCCAAGGCC------
reseq__G1_humanF48  GAGCATCCCAGACCCAGCGCGTTCCTCCCCGTGGTGCATCCCAGCCCGGTTCTTCACACCCCTCACCCCC-AGCTTCCTGATCCTACTCC
reseq__G1_humanF36  GAGCATCCCAGACCCAGCGCGTTCCTCCCCGTGGTGCATCCCAGCCCGGTGTCTCACACCCCTCACCCCA-AGCATACCG----------
reseq__G1_humanF24  GAGCATCCCAGACCCAGCGCGTTCCTCCCCGTGGTGCATCCCAGCCCGGTGTCTCACACCCCTCACCCCAGCTCAGGCAAAGTT------
reseq__G1_chimpF96  GAGCATCCCAGACCCAGCGCGTTCCTCCCCGCGGTGCATCCCAGCCCGGTGTCTCACACCCCTCACCCCA-TGCATCCG-----------
reseq__G1_chimpF84  GAGCATCCCAGACCCAGCGCGTTCCTCCCCGCGGTGCATCCCAGCCCGGTGTCTCACACCCCTCACCCCA-TGCATACAT----------
reseq__G1_chimpF72  GAGCATCCCAGACCCAGCGCGTTCCTCCCCGCGGTGCATCCCAGCCCGGTGTCTCACACCCCTCACCCCA-TGCGTCT------------
reseq__G1_chimpF60  GAGCATCCCAGACCCAGCGCGTTCCTCCCCGCGGTGCATCCCAGCCCGGTGTCTCACACCCCTCACCCCA-TGCTC--------------
reseq__G1_chimpF48  GAGCATCCCAGACCCAGCGCGTTCCTCCCCGCGGTGCATCCCAGCCCGGTGTCTCACACCCCTCACCCCA-TGC----------------
reseq__G1_chimpF36  GAGCATCCCAGACCCAGCGCGTTCCTCCCCGCGGTGCATCCCAGCCCGGTGTCTCACACCCCTCACCCCA-TGCATAATG----------
reseq__G1_chimpF24  GAGCATCCCAGACCCAGCGCGTTCCTCCCCGCGGTGCATCCCAGCCCGGTGTCTCACACCCCTCACCCCA-TGCAC--------------
reseq__G1_chimpF12  GAGCATCCCAGACCCAGCGCGTTCCTCCCCGCGGTGCATCCCAGCCCGGTGTCTCACACCCCTCACCCCA-TGC----------------
# Our alignments (spliced for proteins)
human_dna           ------------------------------------------------------------------------------------------
chimp_dna           ------------------------------------------------------------------------------------------
macaque_dna         ------------------------------------------------------------------------------------------
# Ref.[2] alignments (spliced for proteins)
hg18                ------------------------------------------------------------------------------------------
panTro2             ------------------------------------------------------------------------------------------
rheMac2             ------------------------------------------------------------------------------------------