Resequencing analysis for Gene: IRF7
There are 3 sections to this alignment:
- resequencing alignment (unspliced, by construction)
- Our alignments (spliced for coding sequence)
- Alignments of ref. [2] (spliced for coding sequence)
Note that:
- these alignments should be taken in context with whole protein alignment. Spliced alignments may be interrupted by splicing events.
- Putative signal of positive selection is shown in blue.
.... ....|1... ....|2... ....|3... ....|4... ....|5... ....|6... ....|7... ....|8... ....|9... ....|10.. ....|11.. ....|12.. ....|13.. ....|14.. ....|
reseq__G0_humanF95 ------------------------------------------------------------------------------------------------------------------------------------------------------
reseq__G0_humanF83 ------------------------------------------------------------------------------------------------------------------------------------------------------
reseq__G0_humanF71 ------------------------------------------------------------------------------------------------------------------------------------------------------
reseq__G0_humanF59 ------------------------------------------------------------------------------------------------------------------------------------------------------
reseq__G0_humanF47 ------------------------------------------------------------------------------------------------------------------------------------------------------
reseq__G0_humanF35 ------------------------------------------------------------------------------------------------------------------------------------------------------
reseq__G0_humanF23 ------------------------------------------------------------------------------------------------------------------------------------------------------
reseq__G0_humanF11 ------------------------------------------------------------------------------------------------------------------------------------------------------
reseq__G0_chimpF95 ------------------------------------------------------------------------------------------------------------------------------------------------------
reseq__G0_chimpF83 TGATCCGAGAAGCAGTGTGTGATATAGTCACTGCACATAAATCTGAGTCAAGCGATCCTCCCCTCAGCGTCCGAGAAACGTGAAGTACAGGAAGTACCCACACCCTGGGAACGTTTCAAAAAAATTAGAAAAAAGAGATAAGGCTCCCAT
reseq__G0_chimpF59 ------------------------------------------------------------------------------------------------------------------------------------------------------
reseq__G0_chimpF47 ------------------------------------------------------------------------------------------------------------------------------------------------------
reseq__G0_chimpF35 ------------------------------------------------------------------------------------------------------------------------------------------------------
reseq__G0_chimpF23 ------------------------------------------------------------------------------------------------------------------------------------------------------
reseq__G0_chimpF11 ------------------------------------------------------------------------------------------------------------------------------------------------------
reseq_G0_chimpF71_r ------------------------------------------------------------------------------------------------------------------------------------------------------
human_dna_us ------------------------------------------------------------------------------------------------------------------------------------------------------
chimp_dna ------------------------------------------------------------------------------------------------------------------------------------------------------
macaque_dna ------------------------------------------------------------------------------------------------------------------------------------------------------
hg18_gibbs ------------------------------------------------------------------------------------------------------------------------------------------------------
panTro2_gibbs ------------------------------------------------------------------------------------------------------------------------------------------------------
rheMac2_gibbs ------------------------------------------------------------------------------------------------------------------------------------------------------
15.. ....|16.. ....|17.. ....|18.. ....|19.. ....|20.. ....|21.. ....|22.. ....|23.. ....|24.. ....|25.. ....|26.. ....|27.. ....|28.. ....|29.. ....|
reseq__G0_humanF95 ----------------------------------------------------------------------------------------------------------------------------------------TGGTACAGCAATAC
reseq__G0_humanF83 --------------------------------------------------------------------------------------------------------------TCGACATGAAGATTCC-------CACGGAGGTGACTCTTT
reseq__G0_humanF71 ---------------------------------------------------------------------CCGAAGCCCAGGAGAAG--GTAAGGGGGGAGCCT-CGCCCGCCTGCCCGAATTCCCCC----AGCTTGGAACAACACATTC
reseq__G0_humanF59 ----------------------------------------------------------------------TCAAGCCCAGGTAGAGAGGAAAGCGTGGAGCCACGCGCTGCATGCCCGAATTCCCCC---AGCTCGTGTAACGGAATCAG
reseq__G0_humanF47 ----------------------------------------------------------------------TCGACCCCACTAGAGG--TAAGGGGGCGAGCCAGCGC----GAGGCCGAAATCCCC--CAGCTCGTACAAC-ACCTCCCC
reseq__G0_humanF35 -------------------------------------------------------------------GTTCGAAGGCCAG-TAGA-GGACAGGGGGGAACCAGCAAGAATTCCGG--GAATTCCACC----AGTATCGAAAAAGAACATC
reseq__G0_humanF23 --------------------------------------------------------------------TTCGAAGCCCAGCCAGAG-GTAAGGTGTGGAGCCA-CGGCGCGCGGCCCGAAATCCCCA------GCTTGAAGTAGGCAT-C
reseq__G0_humanF11 ------------------------------------------------------------------------------------------------------------------------------------------------------
reseq__G0_chimpF95 ---------------------------------CGTGGTGAACCTGGGCTTCGCGAAACGGTAGAGAACGTCAAGCCCATGTGGAT--CCATCCGGGGCGGTAACGGCGAGCCGGACAGAAATCCA-------TCTCGGAACAGTAATAG
reseq__G0_chimpF83 ATGTAGCCAGTCCAGTCGAGCTTGTGGGCATCAAGTGATTCACCTTGGCCTCCCCAAAGGCTGAGATTTCTGAAGCCCAGGCAGAT--GGTATCGGGGGGGGCCAGGCGTGCGGTGCCGAATTTCCC---CCCCCCCCATCAAGCAATTG
reseq__G0_chimpF59 --------------------------------------------------------------------TTCGAAGCCCAGGTAGAG--GTATAGGTGGGAGCCACGCGCGCGGGCCCGAATTCCCAC---CAGCTTTTAGAAGGGACTCC
reseq__G0_chimpF47 -------------------------------------------------------------------------------------------------------------------------------------ACCTGTTTCACACCCTC
reseq__G0_chimpF35 --------------------------------------------------------------------TTCGAAGCCCAGGTAGATGGAAAGGGGGGGAGCCACGGCGCGCCTGCCCGAATTCCCCC----AGC-TCTAAGAAGGATACC
reseq__G0_chimpF23 -------------------------------------------------------------------TTATCAAGCCCAGCCGAGG--TAAGAGGGGGGGCCAGGGCCTGTGGGCCCGAATTTCCCTCCAACTCCCCAGACTGTGGCTGA
reseq__G0_chimpF11 ----------------------------------------------------------------------------------------------------------TGAAGATAGAGGAAGGGGAGAGGGGGGAATTAGGTGATGTAGGA
reseq_G0_chimpF71_r ---------------------------------CGTGGTGAACCTGGGCTTCGCGAAACGGTAGAGAACGTCAAGCCCATGTGGAT--CCATCCGGGGCGGTAACGGCGAGCCGGACAGAAATCCA-------TCTCGGAACAGTAATAG
# Our alignments (spliced for proteins)
human_dna_us ---------------------------------------------------------------------------------------------------------------------------------------------------TCC
chimp_dna ---------------------------------------------------------------------------------------------------------------------------------------------------TCC
macaque_dna ---------------------------------------------------------------------------------------------------------------------------------------------------TCC
# Ref.[2] alignments (spliced for proteins)
hg18_gibbs ---------------------------------------------------------------------------------------------------------------------------------------------------TCC
panTro2_gibbs ---------------------------------------------------------------------------------------------------------------------------------------------------TCC
rheMac2_gibbs ---------------------------------------------------------------------------------------------------------------------------------------------------TCC
30.. ....|31.. ....|32.. ....|33.. ....|34.. ....|35.. ....|36.. ....|37.. ....|38.. ....|39.. ....|40.. ....|41.. ....|42.. ....|43.. ....|44.. ....|
reseq__G0_humanF95 CAGCACCAGCGACAACGACGACGGCTTGCACCAGTCTGTGCGGGGTTCCCCATCTTCGACTTCAGAGTCTTCTTCCAAGGTCAGTGAGGCCCTTGCCTGGGGGGCTGTCTCCAGGGGTCCTTGGGAGCACCTGCCTGCCAGGTACTCAGC
reseq__G0_humanF83 CCAGCCCATCCAGCAGCAGCGGAAGGGGCACCCGCCTGTGTGGGT--CCCCATCTTCGACTTCAGAGTCTTCTTCCAAGGTCAGTGAGGCCCTTGCCTGGGGGGCTGTCTCCAGGGGTCCTTGGGAGCACCTGCCTGCCAGGTACTCAGC
reseq__G0_humanF71 CAGCACCACTCACAACAGGGGTAGCAAGCATCCC---ATATGTGATTCCCCATCTTCGACTTCAGAGTCTTCTTCCAAGGTCAGTGAGGCCCTTGCCTGGGGGGCTGTCTCCAGGGGTCGTTGGGAGCACCTGCCTGCCAGGTACTCAGC
reseq__G0_humanF59 CGCAAGCACAGGCAGGGGAGAGCAAGGGGACCAG-----GAGTGATTCCCCATCTTCGACTTCAGAGTCTTCTTCCAAGGTCAGTGAGGCCCTTGCCTGGGGGGCTGTCTCCAGGGGTCCTTGGGAGCACCTGCCTGCCAGGTACTCAGC
reseq__G0_humanF47 CACCACCGCCAGCA----GGAGGGGGAGGGACAG---GGAGTGGGT-CCCCATCTTCGACTTCAGAGTCTTCTTCGGAGGTCAGTGAGGCCCCTGCCTGGGGGGCTGTCTCCAGGGGTCGTTGGGAGCACCTGCCTGCCAGGTACTCAGC
reseq__G0_humanF35 CCCATCCAGCGACCAGTGGTGGCCAGCGCCCC-C---GCTGATGCCTCCCCATCTTCGACTTCAGAGTCTTCTTCCGAGGTCAGTGAGGCCCCTGCCTGGGGGGCTGTCTCCAGGGGTCGTTGGGAGCACCTGCCTGCCAGGTACTCAGC
reseq__G0_humanF23 CACCACCACCAGGCAGGTGTAGGCAAGGAGGA-----GGAGGTAGGTCCCCATCTTCGACTTCAGAGTCTTCTTCCAAGGTCAGTGAGGCCCCTGCCTGGGGGGCTGTCTCCAGGGGTCGTTGGGAGCACCTGCCTGCCAGGTACTCAGC
reseq__G0_humanF11 ---------------------------------------------TTCCCCATCTTCGACTTCAGAGTCTTCTTCCAAGGTCAGTGAGGCCCTTGCCTGGGGGGCTGTCTCCAGGGGTCGTTGGGAGCACCTGCCTGCCAGGTACTCAGC
reseq__G0_chimpF95 CAGCTCCACTGACAGAGAGGACGGCGCGCACCACCCTGTTCGGGGT-CCCCATCTTCGACTTCAGAGTCTTCTTCGGAGGTCAGTGAGGCCCCTGCCTGGGGGGCTGTCTCCAGGGGTCCTTGGGAGCACCTGCCTGCCAGGTACTCAGC
reseq__G0_chimpF83 CACAACCACAGACACAGAGATCGGCAAGCTCCCC---AGATGAATT-CCCCATCTTCGACTTCAGAGTCTTCTTCGGAGGTCAGTGAGGCCCCTGCCTGGGGGGCTGTCTCCAGGGGTCCTTGGGAGCACCTGCCTGCCAGGTACTCAGC
reseq__G0_chimpF59 CCGAACCCGCAGGCAGGTGGTAGCAAGGAACGAG-----GATGATTTCCCCATCTTCGACTTCAGAGTCTTCTTCGGAGGTCAGTGAGGCCCCTGCCTGGGGGGCTGTCTCCAGGGGTCCTTGGGAGCACCTGCCTGCCAGGTACTCAGC
reseq__G0_chimpF47 CACGCGCACAGACACAGAGGGGGGGGGGCACCAGA--GGGCAATGTCCCCCATCTTCGACTTCAGAGTCTTCTTCGGAGGTCAGTGAGGCCCCTGCCTGGGGGGCTGTCTCCAGGGGTCCTTGGGAGCACCTGCCTGCCAGGTACTCAGC
reseq__G0_chimpF35 CCGACCCCGCAGGCAGGTGCTCCCAAGGCCCCGT---GGTGATGT-TCCCCATCTTCGACTTCAGAGTCTTCTTCGGAGGTCAGTGAGGCCCCTGCCTGGGGGGCTGTCTCCAGGGGTCCTTGGGAGCACCTGCCTGCCAGGTACTCAGC
reseq__G0_chimpF23 CACCGCCACCGGCACAGAGGAGGCGGGGAGCCAG---GGTTGATGT-CCCCATCTTCGACTTCAGAGTCTTCTTCGGAGGTCAGTGAGGCCCCTGCCTGGGGGGCTGTCTCCAGGGGTCCTTGGGAGCACCTGCCTGCCAGGTACTCAGC
reseq__G0_chimpF11 GAGTGGAAAAGAGGAGGGAGATAGTAGGAAGGAGA--AAATGATTGTCCCCATCTTCGACTTCAGAGTCTTCTTCGGAGGTCAGTGAGGCCCCTGCCTGGGGGGCTGTCTCCAGGGG---------------------------------
reseq_G0_chimpF71_r CAGCTCCACTGACAGAGAGGACGGCGCGCACCACCCTGTTCGGGGT-CCCCATCTTCGACTTCAGAGTCTTCTTCGGAGGTCAGTGAGGCCCCTGCCTGGGGGGCTGTCTCCAGGGGTCCTTGGGAGCACCTGCCTGCCAGGTACTCAGC
# Our alignments (spliced for proteins)
human_dna_us GCCAGCCCCTCCACCCCAGCCTGCCTGCTGCCTCGGAACTGTGACACCCCCATCTTCGACTTCAGAGTCTTCTTCCAAGG----------------------------------------------------------------------
chimp_dna GCCAGCCCCTCCACCCCAGCCTGCCTGCTGCCTCGGAACTGTGACACCCCCATCTTCGACTTCAGAGTCTTCTTCGGAGG----------------------------------------------------------------------
macaque_dna GCCAGCCCCTCCACCCCAGCCTGCCTGCTGCCTCGGAACTGCGACACCCCCATCTTTGACTTCAGAGTCTTCTTCCAAGG----------------------------------------------------------------------
# Ref.[2] alignments (spliced for proteins)
hg18_gibbs GCCAGCCCCTCCACCCCAGCCTGCCTGCTGCCTCGGAACTGTGACACCCCCATCTTCGACTTCAGAGTCTTCTTCCAA------------------------------------------------------------------------
panTro2_gibbs GCCAGCCCCTCCACCCCAGCCTGCCTGCTGCCTCGGAACTGTGACACCCCCATCTTCGACTTCAGAGTCTTCTTCGGA------------------------------------------------------------------------
rheMac2_gibbs GCCAGCCCCTCCACCCCAGCCTGCCTGCTGCCTCGGAACTGCGACACCCCCATCTTTGACTTCAGAGTCTTCTTCCAA------------------------------------------------------------------------
45.. ....|46.. ....|47.. ....|48.. ....|49.. ....|50.. ..
reseq__G0_humanF95 AGAGTCCCCTTCTTCAGAGCTGGTGGAAT--CCGGCACGGCAGCGCCGTCCACACT-
reseq__G0_humanF83 AGAGTCCCCTTCTTCAGAGCTGGTGGAAT-CCGGGCACGGCAGG--CGCCCG-----
reseq__G0_humanF71 AGAGTCCCCTTCTTCAGAGCTGGTGGAAT--CCGGCACGGCAGCGCC-TCCAATG--
reseq__G0_humanF59 AGAGTCCCCTTCTTCAGAGCTGGTGGAAT-CCGGGCACGGCAGCCCCGTCCCAC---
reseq__G0_humanF47 AGAGTCCCCTTCTTCAGAGCTGGTGGAAT--CCGGCACG-CAGCGCCGGCCCACTT-
reseq__G0_humanF35 AGAGTCCCCTTCTTCAGAGCTGGTGGAAT--CCGGCACGGCAGC-CCGGCCCAT---
reseq__G0_humanF23 AGAGTCCCCTTCTTCAGAGCTGGTGGAATTCCGGACACGGCCAG-------------
reseq__G0_humanF11 AGAGTCCCCTTCTTCAGAGCTGGTGGAAT--CCGCCC--------------------
reseq__G0_chimpF95 AGAGTCCCCTTCTTCAGAGCTGGTGGAAT--CCGGCACG-CAGCGCCGCCCAGCG--
reseq__G0_chimpF83 AGAGTCCCCTTCTTCAGAGCTGGTG-AAT--CCGGCACGGCAGCGCCCGCCCATG--
reseq__G0_chimpF59 AGAGTCCCCTTCTTCAGAGCTGGTGGAAT--CCGGCACGGCAGCCCCGCCCAGTG--
reseq__G0_chimpF47 AGAGTCCCCTTCTTCAGAGCTGGTGGAAT--CCGGCACGGCAGCACCGTCCCGACCC
reseq__G0_chimpF35 AGAGTCCCCTTCTTCAGAGCTGGTGGAAT--CCGGCACGGCAGCGCCGGCCCCCTG-
reseq__G0_chimpF23 AGAGTCCCCTTCTTCAGAGCTGGTGGAAT--CCGGCACGTCAGCACCAGCCCACG--
reseq__G0_chimpF11 ---------------------------------------------------------
reseq_G0_chimpF71_r AGAGTCCCCTTCTTCAGAGCTGGTGGAAT--CCGGCACG-CAGCGCCGCCCAGCG--
# Our alignments (spliced for proteins)
human_dna_us ---------------------------------------------------------
chimp_dna ---------------------------------------------------------
macaque_dna ---------------------------------------------------------
# Ref.[2] alignments (spliced for proteins)
hg18_gibbs ---------------------------------------------------------
panTro2_gibbs ---------------------------------------------------------
rheMac2_gibbs ---------------------------------------------------------