Resequencing analysis for Gene: HECW1
There are 3 sections to this alignment:
- resequencing alignment (unspliced, by construction)
- Our alignments (spliced for coding sequence)
- Alignments of ref. [1] (spliced for coding sequence)
Note that:
- these alignments should be taken in context with whole protein alignment. Spliced alignments may be interrupted by splicing events.
- Putative signal of positive selection is shown in blue.
.... ....|1... ....|2... ....|3... ....|4... ....|5... ....|6... ....|7... ....|8... ....|9... ....|10.. ....|11.. ....|12.. ....|13.. ....|14.. ....|
reseq__B6_humanF66 -----CTCAGATTATTGATGTGACATATTCTTTCATT-C-CA-GCAATT-CAGTTTA--GAGT-CCTA-GCCCACA-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF54 -----------------------------CTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTTAGCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCCTGGGAAAGC
reseq__B6_humanF90 CACCTCTC-GTTA-TTGATGTGACATATTCTTT-ATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF42 -----------------------------CTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTTCGCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
primer_B6 ----------------------------TCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF90 ----------------------------TCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_humanF42 --ACTCTCAGTTA-TTGATGTGACATATTCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_humanF54 ---CTCTCAG-TTATTGATGTGACATATTCTTTCATTCG-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_humanF78 --CCTCTCAGTTA-TTGATGTGACATATTCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF66 ----------------------------TCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
primer_B6_human ---CTCTCAGTTAATTGATGTGACATATTCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF18 ------------------------------TATCATTCG-CA-GCAATT-CAGTTTT--GTGT-CCTTTGCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF30 ----------------------------TCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF78 -------------------------------TTCATTTG-CA-GCAATTCCAGTTATT-GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_humanF30 --CCTCTCAGTTA-TTGATGTGACATATTCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_humanF18 ------------TGATGTGACATTATTTCCTTTCATTTGGCACGCAATTTCAGTTCTTAGTGTGCCTTTGCCCACTTGACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_humanF6 -----CTCAGATTATTGATGTGACATATTCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF6 --------A---------------------------------------------------------------------------------------------------------------------------------------------
# Our alignments (spliced for proteins)
human_dna --------------------------------------------CAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
chimp_dna --------------------------------------------CAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
macaque_dna --------------------------------------------CAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGTCCCATCATCAAGCGTTTCTTGGGAAAGC
# Ref.[1] alignments (spliced for proteins)
ENSP00000265522 -----------------------------------------------------------------------------GA---GC----AATT-----------C---TTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
ENSPTRP00000032661 -----------------------------------------------------------------------------GA---GG----TGAA-----------G---TTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCCTGGGAAAGC
ENSMMUP00000025005 -----------------------------------------------------------------------------GA---GC----AATT-----------C---TTTGCCAAGAGCCGTCCCATCATCAAGCGTTTCTTGGGAAAGC
15.. ....|16.. ....|17.. ....|18.. ....|19..
reseq__B6_humanF66 TGTCGATGCCCGTTCAAAGACTCTGGAAGAGACACGCCATGT--
reseq__B6_chimpF54 TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCAACG--
reseq__B6_humanF90 TGTCGATGCCCGTTCAAAGACTC-TGGAGAGACACGCCATGGT-
reseq__B6_chimpF42 TGTCGATGCCCGTTCAAAGACTCTGGAAGAGACACGCCACTC--
primer_B6 TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCATAG--
reseq__B6_chimpF90 TGTCGATGCCCGTTCAAAGACTCTGGAAGAGACACGCCACAG--
reseq__B6_humanF42 TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCACTC--
reseq__B6_humanF54 TGTCGATGCCCGTTCAAAGACTCTGGAAGAGACACGCCAATG--
reseq__B6_humanF78 TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCAATGG--
reseq__B6_chimpF66 TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCATGC--
primer_B6_human TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCATAG--
reseq__B6_chimpF18 TGTCGATGCCCGTTCAAAGACTCCAGGAGAGACACGCCAAAC--
reseq__B6_chimpF30 TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCAACA--
reseq__B6_chimpF78 TGTCGATGCCCGTTCAAAGACTCCGGAAGAGACACGCCATAT--
reseq__B6_humanF30 TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCACTG--
reseq__B6_humanF18 TGTCGATGCCCGTTCAAAGACTCCGGGAGAGACACGCCATAT--
reseq__B6_humanF6 TGTCGATGCCCGTTCAAAGACTCTGGAAGAGACACGCCAACA--
reseq__B6_chimpF6 --------------------------------------------
# Our alignments (spliced for proteins)
human_dna TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCC------
chimp_dna TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCC------
macaque_dna TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCC------
# Ref.[1] alignments (spliced for proteins)
ENSP00000265522 TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCATAGGG
ENSPTRP00000032661 TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCATAGGG
ENSMMUP00000025005 TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCATAGGG