Resequencing analysis for Gene: BVES


There are 3 sections to this alignment:
  - resequencing alignment (unspliced, by construction)
  - Our alignments (spliced for coding sequence)
  - Alignments of ref. [1] (spliced for coding sequence)

Note that:
  - these alignments should be taken in context with whole protein alignment msa.html. Spliced alignments may be interrupted by splicing events.
  - Putative signal of positive selection is shown in blue.

                    .... ....|1... ....|2... ....|3... ....|4... ....|5... ....|6... ....|7... ....|8... ....|9... ....|10.. ....|11.. ....|12.. ....|13.. ....|14.. ....|
reseq__B13_chimpF34 --GGGGAGCGGAGGGGGGCCCCGGGGAGCCCCCGAAAAAACAACCCCCCCCCCCCCCCCTGGGAACAGTAT-ACCAGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
reseq__B13_humanF94 ----------GGGAGGTACCCCGAAGAAACTGGTGCA-GCCGTCGTCACTGTCA---CTTGGGAACAGTATTACCAGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
reseq__B13_chimpF58 ------------------------------------------------------------GGGAACAGTAT-ACCAGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
reseq__B13_chimpF10 ------------GAGGTACCCCGAAGAAACTGGTGCACGCCGTCGTCACTGTCG---CTTGGGAACAGTATTAACAGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
reseq__B13_humanF10 ----------TGGAGGTACCCCGAAGAAACTGGTGCA-GCCGTCGTCACTGTCA---CTTTGGAACAGTATTACCAGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
reseq__B13_humanF46 ----------GGGAGGTACCCCGAAGAAACTGGTGCACGCCGTCGTCACTGTCA---CTTGGGAACAGTATTAC-AGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
reseq__B13_chimpF94 --------CTGGGAGGTACCCCGAAGAAACTGGTGCA-GCCGTCGTCACTGTCTC--TTCATGAACAGTATA-CCAGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
reseq__B13_chimpF70 ------------GAGGTACCCCGAAGAAACTGGTGCACGCCGTCGTCACTGTCA---CTTGGGAACAGTATTACCAGCTCCAGTGACAGTGACGGCGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
reseq__B13_humanF82 -----------GGAGGTACCCCGAAGAAACTGGTGCACGCCGTCGTCACTGTCT---CTTGGGAACAGTATAACCAGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
reseq__B13_chimpF22 -----------GGAGGTACCCCGAAGAAACTGGTGCA-GCCGTCGTCACTGTCA---CTTTGGAACAGTACGAGCAGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
reseq__B13_humanF22 ---------GGGGAGGTACCCCGAAGAAACTGGTGCA-GCCGTCGTCACTGTCC---CTTGGGAACAGTATTAC-AGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
reseq__B13_humanF34 ----------GGGAGGTACCCCGAAGAAACTGGTGCACGCCGTCGTCACTGTC----CTTGGGAACAGTATAGCCAGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
reseq__B13_humanF58 -----------GGAGGTACCCCGAAGAAACTGGTGCACGCCGTCGTCACTGTCT---CTTGGGAACAGTATTACCAGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
reseq__B13_humanF70 -----------TGAGGTACCCCGAAGAAACTGGTGCAAGCCGTCGTCACCGGCA---CCTTTGAACAGTATAACCAGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTTTTCGGGGTACCTCCAGCATGTCCTCTTTTCGTAAGTTA
reseq__B13_chimpF82 ----------GGGAGGTACCCCGAAGAAACTGGTGCA-GCCGTCGTCACTGTCA---CTTTGGAACAGTAC-ACCAGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
reseq__B13_chimpF46 ---------------TTCGTTTGGATAACTAGAAGAAGACCCGCGGGGCCCCCCAAATTTGGGAACAGTATTACCAGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
primer_B13          ---------------GAACATCAGCTCAGCCTCTGCACACAGATCTCCATGTTGGAAATGAGGAACAGTATAGCCAGCTCCAGTGACAGTGACGACGGCTTGCACCAGTTTCTTCGGGGTACCTCCAGCATGTCCTCTCTTCGTAAGTTA
# Our alignments (spliced for proteins)
human_dna           AAAGCCAAAAAGCTGGAACATCAGCTCAGCCTCTGCACACAGATCTCCATGTTGGAAATGAGGAACAGTATAGCCAGCTCCAGTGACAGTGAC---------------------------------------------------------
chimp_dna           AAAGCCAAAAAGCTGGAACATCAGCTCAGCCTCTGCACACAGATCTCCATGTTGGAAATGAGGAACAGTATAGCCAGCTCCAGTGACAGTGAC---------------------------------------------------------
macaque_dna         AAAGCCAAAAAGCTGGAACATCAGCTCAGCCTCTGCACACAGATCTCCATGTTGGAAATGAGGAACAGTATAGCCAGCTCCAGTGACAGTGAC---------------------------------------------------------
# Ref.[1] alignments (spliced for proteins)
ENSPTRP00000031520  AAAGCCAAAAAGCTGGAACATCAGCTCAGCCTCTGCACACAGATCTCCATGTTGGAAATGAGGA---GTATAGCCAGCTCCAGCTCGAGTAGTGAC------------------------------------------------------
ENSP00000313172     AAAGCCAAAAAGCTGGAACATCAGCTCAGCCTCTGCACACAGATCTCCATGTTGGAAATGAGGA---GTATAGCCAGCTCCAGTGACAGT------------------------------------------------------------
ENSMMUP00000019002  AAAGCCAAAAAGCTGGAACATCAGCTCAGCCTCTGCACACAGATCTCCATGTTGGAAATGAGGA---GTATAGCCAGCTCCAGTGACAGT------------------------------------------------------------


                    15.. ....|16.. ....|17.. ....|18.. ....|19.. ....|20.. ....|21.. ....|22.
reseq__B13_chimpF34 TCCCAAAACTGATACTACTCCAGAGTTCTGATGG-TATCTCTGGACATAGACAA-------------------
reseq__B13_humanF94 TCCCAAAACTGATACTACTCCAGAGTTCTGATGGGTATCTCTGGACATAGACA-AATGACAACTT--------
reseq__B13_chimpF58 TCCCAAAACTGATACTACTCCAGAGTTCTGATGG-TATCTCTGGACATAGACA-AATGACAACTTTGATTAGA
reseq__B13_chimpF10 TCCCAAAACTGATACTACTCCAGAGTTCTGATGG-TATCTCTGGACATAGACA-AATGACAACTTTG------
reseq__B13_humanF10 TCCCAAAACTGATACTACTCCAGAGTTCTGATGGGTATCTCTGGACATAGAC-AAATGACAACTT--------
reseq__B13_humanF46 TCCCAAAACTGATACTACTCCAGAGTTCTGATGGGTATCTCTGGACATAGACA-AATGACAACTT--------
reseq__B13_chimpF94 TCCCAAAACTGATACTACTCCAGAGTTCTGATGG-TATCTCTGGACATAGACA-AATGACAACT---------
reseq__B13_chimpF70 TCCCAAAACTGATACTACTCCAGAGTTCTGATGG-TATCTCTGGACATAGACA-AATGACAACTTTG------
reseq__B13_humanF82 TCCCAAAACTGATACTACTCCAGAGTTCTGATGGGTATCTCTGGACATAGACA-AATGACAACTT--------
reseq__B13_chimpF22 TCCCAAAACTGATACTACTCCAGAGTTCTGATGG-TATCTCTGGACATAGAC-AAATGACAACTTGA------
reseq__B13_humanF22 TCCCAAAACTGATACTACTCCAGAGTTCTGATGGGTATCTCTGGACATAGACAGAATGACGAAC---------
reseq__B13_humanF34 TCCCAAAACTGATACTACTCCAGAGTTCTGATGGGTATCTCTGGACATAGACA-AATGACAACTT--------
reseq__B13_humanF58 TCCCAAAACTGATACTACTCCAGAGTTCTGATGGGTATCTCTGGACATAGACA-AATGACAACTT--------
reseq__B13_humanF70 TCCCAAAACTGATACTACTCCAGAGTTTTGATGGGTATCTCTGGACATAGACA-AATGACAACTT--------
reseq__B13_chimpF82 TCCGAAAACTGATACTACTCCAGAGTTCTGATGG-TATCTCTGGACATAGACGAAATGACAACTTT-------
reseq__B13_chimpF46 TCCCAAAACTGATACTACTCCAGAGTTCTGATGG-TATCTCTGGACATAGACA-AATGACAACTTTG------
primer_B13          TCCCAAAACTGATACTACTCCAGAGTTCTGATNGGTATCTCTGGACATAGACAAATGACAACTTT--------
# Our alignments (spliced for proteins)
human_dna           -------------------------------------------------------------------------
chimp_dna           -------------------------------------------------------------------------
macaque_dna         -------------------------------------------------------------------------
# Ref.[1] alignments (spliced for proteins)
ENSPTRP00000031520  -------------------------------------------------------------------------
ENSP00000313172     -------------------------------------------------------------------------
ENSMMUP00000019002  -------------------------------------------------------------------------