Resequencing analysis for Gene: GLCCI1


There are 3 sections to this alignment:
  - resequencing alignment (unspliced, by construction)
  - Our alignments (spliced for coding sequence)
  - Alignments of ref. [1] (spliced for coding sequence)

Note that:
  - these alignments should be taken in context with whole protein alignment. Spliced alignments may be interrupted by splicing events.
  - Putative signal of positive selection is shown in blue.

                    .... ....|1... ....|2... ....|3... ....|4... ....|5... ....|6... ....|7... ....|8... ....|9... ....|10.. ....|11.. ....|12.. ....|13.. ....|14.. ....|
reseq__B11_humanF21 ---ATACTCTTTTAGTTTCTTGATTGCTTTGACCACAAATAATTTGATACCACCTTTATCTTATCTCAT-AGGCTACTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGTGCCAAAATCATCTGTTTCGCGTGTGCC
reseq__B11_chimpF69 -CCATACTCTTTAG--TTCTTGATTGCTTTGACCACAAATAATTTGATACCACCTTTATCTTATCTCAT-AGGCTACTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGTTTCCA----------------------
reseq__B11_humanF57 -TTCCAACTCTTTA--TTCTTGATTGCTTTGACCACAAATAATTTGATACCACCTTTATCTTATCTCAT-AGGCTACTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGTGCCAAAATCATCTGTTTCGCGTGTGCC
primer_B11          -CCATACTCTTTAG--TTCTTGATTGCTTTGACCACAAATAATTTGATACCACCTTTATCTTATCTCAT-AGGCTACTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGTGCCAAAATCATCTGTTTCNCGTGTGCC
reseq__B11_chimpF9  -TTCTACTCTTTAG--TTCTTGATTGCTTTGACCACAAATAATTTGATACCACCTTTATCTTATCTCAT-AGGCTACTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGTGCCAAAATCATCTGTTTCACGTGTGCC
reseq__B11_humanF33 --TATACTCTTTTAG-TTCTTGATTGCTTTGACCACAAATAATTTGATACCACCTTTATCTTATCTCAT-AGGCTACTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGTGCCAAAATCATCTGTTTCGCGTGTGCC
reseq__B11_chimpF45 --AATATCTCTTAAG--TCAGGAGTGCTTTGACC-CAAATAATTTGATACCACCTTTATCTTCTCTCAT-AGGCTACTGGATCAAAG--TCAGTTCCTATCGCCACTCGTCAAATATATCAGTGCCAAAATCATCCGTTTCACGCGCGCC
reseq__B11_humanF81 --CCTACTTCTTTAG-TTCTTGATTGCTTTGACCACAAATAATTTGATACCACCTTTATCTTATCTCAT-AGGCTACTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGTGCCAAAATCATCTGTTTCGCGTGTGCC
reseq__B11_chimpF21 --CATACTCTTTAG--TTCTTGATTGCTTTGACCACAAATAATTTGATACCACCTTTATCTTATCTCATTAGGCTACTGGATCAAAGGTTCAGTTCCTATGCCCACT-GTCAAATATATCAGGTCCCC----------------------
reseq__B11_humanF69 -TCCTACT-CTTTAG-TTCTTGATTGCTTTGACCACAAATAATTTGATACCACCTTTATCTTATCTCAT-AGGCTACTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGTGCCAAAATCATCTGTTTCGCGTGTGCC
reseq__B11_humanF93 -TAATACTCTTTAG--TTCTTGATTGCTTTGACCACAAATAATTTGATACCACCTTTATCTTATCTCAT-AGGCTACTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGTGCCAAAATCATCTGTTTCGCGTGTGCC
reseq__B11_humanF45 --CCTACTCTTTTAG-TTCTTGATTGCTTTGACCACAAATAATTTGATACCACCTTTATCTTATCTCAT-AGGCTACTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGTGCCAAAATCATCTGTTTCGCGTGTGCC
reseq__B11_chimpF93 -CCATACTCTTTAG--TTCTTGATTGCTTTGACCACAAATAATTTGATACCACCTTTATCTTATCTCAT-AGGCTACTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGGGCCA-----------------------
reseq__B11_chimpF33 TTTATACTCTTTAG--TTCTTGATTGCTTTGAC-ACAAATAATTTGATACCACCTTTATCTTATCTCAT-AGGCTACTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGTGCCAAAATCATCTGTTTCACGTGTGCC
reseq__B11_chimpF81 -GTATACTCTTTAG--TTCTTGATTGCTTTGACCACAAATAATTTGATACCACCTTTATCTTATCTCAT-AGGCTACTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGTGCCAAAATCATCTGTTTCACGTGTGCC
reseq__B11_humanF9  -TCCTACT-CTTTAG-TTCTTGATTGCTTTGACCACAAATAATTTGATACCACCTTTATCTTATCTCAT-AGGCTACTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGTGCCAAAATCATCTGTTTCGCGTGTGCC
# Ref.[1] alignments (spliced for proteins)
ENSPTRP00000032341  -----------------------------------------------------CCATATAACAATCAGT---GCTACTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGTGCCAAAATCATCTGTTTCACGTGTGCC
ENSP00000223145     -----------------------------------------------------CCATATAACAATCAGT---CAGGCTGGATCAAGG--TCAGTTCCTATGCC-ACT-GTCAAATATATCAGTGCCAAAATCATCTGTTTCGCGTGTGCC
ENSMMUP00000001445  -----------------------------------------------------CCATATAACGATCAGTCAGNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

                    15.. ....|16.. ..
reseq__B11_humanF21 CGGGAATGTAGAAGAA-
reseq__B11_chimpF69 -----------------
reseq__B11_humanF57 CGTCAATGTAGAAGAA-
primer_B11          CTGCAATGTAGAAGGA-
reseq__B11_chimpF9  TG-CAATGTAGAAGACC
reseq__B11_humanF33 TG-CAATGTAGAAGAAG
reseq__B11_chimpF45 CGTCAATGTAGAAG---
reseq__B11_humanF81 CGGCAATGTAGAAGAA-
reseq__B11_chimpF21 -----------------
reseq__B11_humanF69 CGACAATGTAGAAGAA-
reseq__B11_humanF93 TGGCAATGTAGAAGAA-
reseq__B11_humanF45 CTGCAATGTAGAAGAC-
reseq__B11_chimpF93 -----------------
reseq__B11_chimpF33 TG-CAATGTAGGAGTGT
reseq__B11_chimpF81 CG-CAATGTAGAAGACC
reseq__B11_humanF9  TGGCAATGTAGAAGAC-
# Ref.[1] alignments (spliced for proteins)
ENSPTRP00000032341  CTGCAATGTA-------
ENSP00000223145     CTGCAATGTA-------
ENSMMUP00000001445  NNNNN------------