ScanACE version 1.3 October 18, 1999 ScanACE -i rrna_synthesis.ace -n 10 -c 2 -g 0.38 -x -z all_orfs.seq Input Motif: CAAAGGCGGCCAAGG 1 1 1 11.6273 GTGAGATGAGCTATG 2 1 1 15.6698 GTGAGAAGGGCCACG 3 1 1 15.6698 ACGAGGCGGGACGTG 4 1 1 16.107 ACGAGGGGGGCGGTG 5 1 1 16.6283 CTAAGGGGCGAAAGG 6 1 1 13.9001 CAGAGGAGGGACCAG 7 1 1 12.889 GGAAGGAGTGCAATG 8 1 1 15.1236 AAAAGGCGGGCGAGG 9 1 1 15.2604 GGAAGAAGAGCTAGG 10 1 1 14.2721 ATGAGATGAGATGAG 11 1 1 15.2555 ATAAGGCGCGCCGGG 12 1 1 15.2306 AAGAGAGGCGATACG 13 1 1 15.2852 GTCAGACGTGATAGG 14 1 1 12.0503 AAGAGGAGACATAAG 15 1 1 13.3426 AAGAGATGAGATGAG 16 1 1 15.2555 AAGAGATGAGATGAG 17 1 1 15.2555 * **** * ** * * Motif Average: 14.6366 Std. Dev.: 1.41336 There are 295 sites scoring better than this cutoff. Sites: 794 321 1 ACGAGGGGGGCGGTG 16.6283 2356 355 0 GAGAGGAGAGCAACG 16.5213 1277 260 0 GAGAGGAGGGCTGCG 16.4915 2285 111 0 ACGAGGCGGGAAAAG 16.1367 3691 139 0 ATGAGGAGGGAGAGG 16.1367 1626 239 0 AAGAGGGGTGAAAAG 16.1367 794 273 1 ACGAGGCGGGACGTG 16.107 4391 251 0 ATGAGGGGTGAAGAG 16.107 704 163 0 GGGAGGGGCGAGAGG 15.9999 2663 151 0 GTGAGGTGAGAAAAG 15.9999 59 168 0 ATGAGATGTGCAAAG 15.8066 1189 236 1 ACGAGAAGGGCAAAG 15.8066 1373 209 1 AAGAGATGAGCAAAG 15.8066 1371 225 1 CTGAGGTGCGCTGAG 15.7894 2013 126 0 AAGAGATGCGCGGCG 15.7768 3251 172 1 AAGAGAAGCGCGGAG 15.7768 79 144 0 AAGAGATGCGCGGGG 15.7768 126 147 1 ATGAGATGAGCTGTG 15.7768 794 191 1 GTGAGAAGGGCCACG 15.6698 3393 5 1 GTGAGAGGAGCTACG 15.6698 571 66 1 GTGAGATGAGCTATG 15.6698 3001 50 0 GAGAGAGGAGCCGAG 15.64 2587 117 0 CTGAGGGGAGATATG 15.2978 2610 265 1 CGGAGGTGGGAGACG 15.2978 2821 91 0 CGGAGGTGGGAAAGG 15.2978 3985 313 0 CAGAGGAGAGAAAAG 15.2978 2892 273 1 ATGAGATGGGAAATG 15.2852 3669 85 0 ATGAGATGAGAAAAG 15.2852 3993 42 0 ATGAGAGGGGAAATG 15.2852 1334 426 0 ATGAGATGTGATATG 15.2852 4016 1 1 AAGAGAGGCGATACG 15.2852 4035 123 1 ACGAGATGAGAGATG 15.2852 1262 635 0 CCGAGGGGTGAGGGG 15.268 2850 155 1 AAAAGGCGGGCGAGG 15.2604 69 467 1 ATAAGGTGAGCAACG 15.2604 3393 410 0 ATAAGGAGGGCAATG 15.2604 633 317 0 ATGAGATGAGATGAG 15.2555 633 322 0 ATGAGATGAGATGAG 15.2555 633 327 0 ATGAGATGAGATGAG 15.2555 666 157 0 AAGAGAAGGGAGGAG 15.2555 2308 368 0 ATGAGATGAGATGAG 15.2555 2308 373 0 ATGAGATGAGATGAG 15.2555 761 167 1 AAGAGATGAGATGAG 15.2555 633 312 0 ATGAGATGAGATGAG 15.2555 2559 197 1 ATGAGATGAGATGAG 15.2555 2754 248 0 ATGAGATGAGATGAG 15.2555 2945 171 0 ATGAGATGAGATGAG 15.2555 2945 176 0 ATGAGATGAGATGAG 15.2555 2945 181 0 ATGAGATGAGATGAG 15.2555 1018 93 1 ATGAGATGAGATGAG 15.2555 3139 312 0 ATGAGATGAGATGAG 15.2555 3411 204 0 ATGAGATGAGATGAG 15.2555 116 511 1 ATGAGATGCGATGCG 15.2555 3473 11 0 AAGAGAGGTGAAGCG 15.2555 3573 212 1 ATGAGATGAGATGAG 15.2555 3588 386 0 ATGAGATGAGATGCG 15.2555 3747 180 0 ATGAGATGAGATGAG 15.2555 3924 171 1 AAGAGAAGTGAGGTG 15.2555 3879 71 0 AGGAGAAGCGAAGAG 15.2555 4097 633 0 AAGAGATGAGATGAG 15.2555 1373 204 1 AAGAGAAGAGATGAG 15.2555 4355 392 0 AAGAGATGAGATGAG 15.2555 4420 77 1 ATGAGATGAGATGAG 15.2555 4420 82 1 ATGAGATGAGATGAG 15.2555 4442 233 1 ATGAGATGAGATGAG 15.2555 1654 154 1 ATGAGATGAGATGAG 15.2555 1687 299 0 ATGAGATGAGATGAG 15.2555 973 89 1 ACAAGGCGAGCAGAG 15.2306 3526 240 1 AGAAGGAGTGCGGGG 15.2306 3865 164 1 AGAAGGAGTGCAGAG 15.2306 3938 156 1 ATAAGGCGCGCCGGG 15.2306 778 2 0 GTGAGAAGGGATATG 15.1485 791 442 1 GAGAGAAGAGACAAG 15.1485 977 126 1 GGGAGAAGAGATAGG 15.1485 4015 216 1 GAGAGAGGTGAAAGG 15.1485 525 110 0 GTGAGATGCGAAATG 15.1485 2226 78 1 GGAAGGAGTGCAATG 15.1236 3197 284 1 GGAAGGAGAGCGAGG 15.1236 1152 41 0 GTAAGGGGCGCAAAG 15.1236 3593 101 1 GGAAGGAGCGCTAGG 15.1236 3809 968 0 GGAAGGGGAGCGAAG 15.1236 4247 425 1 GAAAGGCGAGCCAAG 15.1236 528 219 1 GAAAGGCGCGCTACG 15.1236 2805 57 0 GGGAGATGAGATGAG 15.1187 3098 120 0 GCGAGACGAGAAGAG 15.1187 2476 59 0 ACAAGGAGAGAAATG 14.739 2836 201 0 AAAAGGAGCGAAAAG 14.739 1104 256 1 AGAAGGTGGGAAAAG 14.739 4317 256 1 AAAAGGAGAGAAAGG 14.739 473 386 0 AAAAGGGGGGAAAAG 14.739 1820 132 0 AAAAGGGGAGAAGCG 14.7092 596 469 0 AAAAGGGGAGAAGTG 14.7092 86 72 0 AAAAGGCGTGAAGGG 14.7092 2610 121 1 AAAAGGGGCGACGTG 14.7092 108 275 0 AGAAGGTGGGAGGGG 14.7092 1262 238 1 ACAAGGCGAGAGGAG 14.7092 663 208 0 GGAAGGGGAGAGAAG 14.6022 3097 180 1 GCAAGGAGGGAGAAG 14.6022 1526 88 0 GAAAGGGGAGAAATG 14.6022 194 337 0 CAGAGAAGGGAAACG 14.4463 3493 202 0 CAGAGATGTGATATG 14.4463 2626 361 0 CCAAGGAGGGCAAAG 14.4214 3596 25 0 CCAAGGGGGGCGAGG 14.4214 145 174 1 CAAAGGCGGGCAATG 14.4214 3040 142 0 CGGAGAAGTGAAGAG 14.4165 3139 317 0 CTGAGATGAGATGAG 14.4165 1116 215 0 AAAAGATGCGCTATG 14.4089 3861 114 0 AAAAGAAGGGCTAAG 14.4089 1457 421 1 AAAAGACGAGCAAAG 14.4089 1552 281 0 CAAAGGGGCGCCGCG 14.3916 1964 216 1 AGAAGACGTGCCGCG 14.3791 2173 127 0 ACAAGACGGGCTGGG 14.3791 4385 133 0 ACAAGACGAGCTGCG 14.3791 1589 150 1 AAAAGACGCGCTGTG 14.3791 2408 649 0 GAAAGAAGAGCCAGG 14.2721 2850 206 1 GGAAGAAGAGCTAGG 14.2721 3519 243 0 GAAAGACGAGCCAAG 14.2721 1509 54 1 GTAAGAAGAGCAAGG 14.2721 3691 114 0 GAAAGAGGAGCGGTG 14.2423 3958 84 0 GAAAGAAGCGCCGAG 14.2423 1640 225 1 GGAAGAAGGGCGGCG 14.2423 2830 9 1 GAGAGGGGCGCGCGG 14.1126 1640 201 0 GTGAGGGGGGCGCGG 14.1126 794 343 1 CTAAGGGGCGAAAGG 13.9001 387 136 1 CAAAGGGGCGAAATG 13.9001 1676 714 0 CCAAGGCGCGATAGG 13.9001 1796 117 1 AGAAGATGAGAGAAG 13.8875 1831 385 0 AGAAGACGAGAGAGG 13.8875 1990 185 1 AGAAGAAGAGAAAAG 13.8875 2285 563 0 AAAAGAGGAGAGAAG 13.8875 2606 204 0 ATAAGAAGGGAGACG 13.8875 4027 378 1 AGAAGAAGAGAAATG 13.8875 4439 250 0 ATAAGATGCGATAAG 13.8875 2786 791 1 ACAAGAAGAGATAAG 13.8875 920 123 1 AAAAGAAGAGAAAGG 13.8875 3424 432 1 ATAAGAAGGGAAAAG 13.8875 2923 227 1 ACAAGAAGAGAAACG 13.8875 220 631 0 AAAAGAAGAGAAAGG 13.8875 2991 248 0 AAAAGAAGAGAAAGG 13.8875 251 48 1 AAAAGAAGCGAGAAG 13.8875 3531 128 0 AAAAGACGAGAGAAG 13.8875 3293 161 0 AAAAGAGGGGAAACG 13.8875 516 205 0 ACAAGATGAGAAAAG 13.8875 1556 381 1 AGAAGAGGTGATATG 13.8875 3926 188 0 CGAAGGAGGGATGCG 13.8703 1803 272 0 AAAAGATGTGAAGAG 13.8578 600 347 0 AGAAGAAGGGATGAG 13.8578 2193 406 0 ATAAGAAGAGAAGAG 13.8578 120 221 0 AAAAGACGAGAGGTG 13.8578 2278 113 0 AAAAGACGCGACGCG 13.8578 2355 272 1 AAAAGAAGGGAAGAG 13.8578 194 240 1 AAAAGATGCGAAGTG 13.8578 79 149 0 AGAAGAAGAGATGCG 13.8578 2872 41 1 ATAAGATGAGAAGGG 13.8578 3802 206 0 AAAAGAAGAGAAGTG 13.8578 3470 4 0 AGAAGAGGAGAAGAG 13.8578 337 133 0 AAAAGATGGGAAGTG 13.8578 464 125 0 AAAAGAAGAGATGAG 13.8578 2775 62 0 AGGAGGTGTCCAGGG 13.8342 4106 360 0 AAGAGGGGTCCTGTG 13.8342 147 55 0 GAAAGAAGGGAGAAG 13.7507 1997 613 1 GAAAGAAGGGAAAAG 13.7507 4472 343 1 GAAAGAGGCGAGAAG 13.7507 117 450 0 GGAAGAAGAGAGAGG 13.7507 248 419 0 GTAAGAGGGGACAAG 13.7507 313 444 1 GCAAGAGGGGAAAAG 13.7507 4472 204 1 GCAAGAGGTGAAAGG 13.7507 1226 409 0 GAAAGAAGAGATAGG 13.7507 3591 171 1 GAAAGAGGAGAGAGG 13.7507 3529 387 0 GAAAGAAGAGAGAAG 13.7507 1704 172 0 GAAAGATGTGAAAAG 13.7507 1300 448 0 ATGAGGGGAGAACTG 13.728 3473 16 0 GAAAGAAGAGAGGTG 13.721 2400 60 0 GAAAGATGGGAAGTG 13.721 1528 134 0 GCAAGAAGCGATGTG 13.721 2925 343 0 GAAAGATGAGATGAG 13.721 585 424 1 GAAAGAGGAGAAGAG 13.721 1792 431 1 GAAAGAAGCGATGAG 13.721 2898 202 0 CGAAGAAGCGCCAAG 13.5699 3712 331 0 CAAAGAGGCGCAATG 13.5699 1579 18 1 CCAAGATGGGCAATG 13.5699 4447 10 1 ACCAGGGGAGCAAAG 13.56 968 219 1 ATCAGGAGCGCTACG 13.56 4444 244 0 AGCAGGCGGGCAATG 13.56 2993 129 0 AGCAGGTGCGCTGTG 13.5302 1054 678 1 AACAGGGGTGCTGAG 13.5302 2516 210 1 GGCAGGTGTGCCAAG 13.4232 207 121 1 CCGAGGAGCGCTCAG 13.4104 2000 417 1 AGGAGATGCGCCCTG 13.3978 2796 240 0 AAGAGAAGCGCACTG 13.3978 4216 193 0 GACAGGGGAGCAGGG 13.3934 56 136 0 ACGAGGCGACAAAAG 13.3426 4097 431 0 AAGAGGAGACATAAG 13.3426 3757 442 1 ATGAGGAGGCATGGG 13.3128 569 52 1 ACGAGGCGACAAGCG 13.3128 161 258 1 GGGAGAAGCGCTCGG 13.2611 2278 252 1 GCGAGAAGGGCCCAG 13.2611 4470 6 0 GGGAGATGAGCACAG 13.2611 1997 351 1 GTGAGGTGACATACG 13.2058 2254 40 0 GGGAGGAGCCATAAG 13.2058 1544 74 0 GCGAGGTGGCAAAAG 13.2058 3923 335 1 GGGAGGAGACAAGAG 13.1761 1267 169 1 CAAAGACGAGAGAAG 13.0486 740 91 0 CTAAGATGTGAAAAG 13.0486 2066 134 1 CGAAGAAGGGAGAAG 13.0486 699 43 0 CGAAGACGAGATAAG 13.0486 3062 223 1 CGAAGAAGAGAAAAG 13.0486 4320 170 1 CAAAGAAGAGAAATG 13.0486 1197 474 1 CGAAGACGTGAAACG 13.0486 2769 358 0 ACCAGGTGCGACATG 13.0386 1528 345 1 AGCAGGAGCGAAACG 13.0386 1836 262 1 CAAAGAAGGGATGTG 13.0188 2101 371 0 CTAAGATGCGATGGG 13.0188 3451 90 1 CAAAGAAGTGACGCG 13.0188 2693 231 0 CAAAGATGGGAAGAG 13.0188 2405 190 0 AAGAGAGGGCCAATG 13.0125 3637 50 0 AGGAGAGGGCCAACG 13.0125 166 416 0 ATCAGGTGTGAGGTG 13.0088 1064 73 1 ATCAGGAGCGACGCG 13.0088 213 277 0 AACAGGTGAGATGAG 13.0088 2475 393 0 GACAGGAGCGATAGG 12.9018 3714 197 1 GGCAGGTGAGAAATG 12.9018 426 381 0 GCCAGGCGTGAGAAG 12.9018 946 297 1 CAGAGGAGGGACCAG 12.889 2193 401 0 AAGAGAAGAGAACCG 12.8765 2988 415 1 ATGAGAGGTGAGCAG 12.8765 629 486 1 ATAAGGCGGGCGCGG 12.8516 1956 50 1 GCGAGAGGCCCTGGG 12.8459 3637 29 0 GTGAGAAGACCTGTG 12.8459 2112 130 1 GTGAGAAGCGAGCGG 12.7397 2435 301 1 GTGAGAGGAGATCCG 12.7397 3502 411 0 GAGAGAAGGGAACAG 12.7397 2347 57 1 CTCAGGAGGGCTACG 12.721 586 333 0 GAAAGGGGTGCACAG 12.7148 1245 274 1 ACCAGAAGTGCCACG 12.7085 3650 397 0 AACAGAGGGGCGAAG 12.7085 4390 573 1 CTCAGGGGTGCGGCG 12.6912 1386 350 0 CACAGGCGAGCGGGG 12.6912 1543 132 1 AACAGAGGGGCAGAG 12.6787 3697 68 0 ATCAGAAGGGCGGAG 12.6787 3632 82 0 GGCAGAAGTGCTAAG 12.5717 2498 357 1 GGCAGATGTGCTACG 12.5717 4458 648 1 CAGAGATGGGCTCTG 12.5589 2879 45 1 GGCAGATGGGCAGTG 12.5419 2494 325 0 AAGAGATGGCAGAAG 12.4911 1891 257 1 AAGAGAAGACAAAAG 12.4911 3525 73 1 ATGAGAGGTCAAAAG 12.4911 4295 177 0 ATGAGAAGGCACAAG 12.4911 1085 330 1 AAAAGGGGGCCAATG 12.4662 3218 147 1 AGAAGGTGTCCTACG 12.4662 2230 243 0 AAAAGGCGTCCGATG 12.4662 1628 543 1 ATAAGGGGCCCAAGG 12.4662 2717 251 0 GAGAGAAGCCAAAAG 12.3543 2614 457 1 ACAAGGAGAGAACGG 12.3303 3872 220 0 AAAAGGGGCGAGCGG 12.3303 3914 21 0 AAAAGGGGCGAGCTG 12.3303 790 434 1 ACAAGGTGTGAGCGG 12.3303 177 299 1 GGAAGGTGCCCTATG 12.3295 146 253 1 GGAAGGGGACCTAGG 12.3295 4211 293 0 GAAAGGTGTCCTAAG 12.3295 2002 276 0 GTAAGGTGACCAGGG 12.2997 1428 18 0 CGCAGGGGCGATAGG 12.1996 2213 174 1 GGAAGGCGGGATCTG 12.1935 409 140 1 GAAAGGTGAGAGCCG 12.1935 3817 371 0 GCAAGGAGCGAGCTG 12.1935 1208 352 1 GGAAGGAGGGAGCAG 12.1935 3760 93 0 GAAAGGAGAGAGCGG 12.1935 1009 226 0 GTAAGGGGGGATCAG 12.1935 1324 551 0 AGCAGACGGGAAAAG 12.1871 2426 175 1 AGCAGATGAGAAACG 12.1871 1866 73 0 CCGAGATGTCCGATG 12.1735 1368 188 0 CACAGGGGAGAAGGG 12.1699 1264 92 1 CGCAGGCGCGACGTG 12.1699 1564 98 0 AGCAGAGGCGAAGAG 12.1574 1373 199 1 ACCAGAAGAGAAGAG 12.1574 3704 184 1 AACAGAAGTGAAGAG 12.1574 761 162 1 AGCAGAAGAGATGAG 12.1574 2367 108 0 GTCAGACGCGAAATG 12.0503 2241 61 0 GACAGATGCGATAAG 12.0503 1232 445 0 GACAGAAGGGAAATG 12.0503 283 216 0 GTCAGATGCGAAACG 12.0503 4016 185 1 GTCAGACGTGATAGG 12.0503 4367 252 0 CTGAGAGGTGACCTG 12.0375 2924 168 1 CAGAGATGCGAGCAG 12.0375 3023 353 0 AGAAGAAGCGCACAG 12.0001 877 13 1 AGAAGGGGGCAAAAG 11.9449 4128 422 1 ATAAGGTGGCAAGAG 11.9151 1913 278 1 AAAAGGTGTCACGTG 11.9151 2872 49 1 AGAAGGGGGCAAGGG 11.9151 1465 105 0 AAAAGGGGCCAAGGG 11.9151 1214 158 0 CACAGATGTGCAAGG 11.8695 2353 29 0 GTAAGAAGCGCCCAG 11.8634 1626 93 1 GTAAGAGGTGCTCAG 11.8634 1542 127 0 GGAAGAAGAGCTCTG 11.8634 303 365 0 CACAGAGGCGCAGAG 11.8397