ScanACE version 1.3 October 18, 1999 ScanACE -i rrna_processing.ace -n 3 -c 2 -g 0.38 -x -z all_orfs.seq Input Motif: AGCTCATCGC 1 1 1 18.579 AGCTCATCGC 2 1 1 18.579 AGCTCATCGC 3 1 1 18.579 AGCTCATCGC 4 1 1 18.579 AGCTCATCGC 5 1 1 18.579 AGCTCATCGC 6 1 1 18.579 AGCTCATCGC 7 1 1 18.579 AGCTCATCGC 8 1 1 18.579 AGCTCATCGC 9 1 1 18.579 ATCTCATCGC 10 1 1 17.5037 ATCTCATCGC 11 1 1 17.5037 ATCTCATCGC 12 1 1 17.5037 ATCTCATCGC 13 1 1 17.5037 ATCTCATCGC 14 1 1 17.5037 AGCTCATCTC 15 1 1 17.0227 AGCTCATCTC 16 1 1 17.0227 AGCTCATCTC 17 1 1 17.0227 AGCTCATCTC 18 1 1 17.0227 ACCTCATCGC 19 1 1 17.1054 ACCTCATCGC 20 1 1 17.1054 ATCTCATCTC 21 1 1 15.9473 ATCTCATCTC 22 1 1 15.9473 ATCTCATCTC 23 1 1 15.9473 AGCTCATCGA 24 1 1 15.0644 TGCTCATCGC 25 1 1 15.3373 CTCTCATCGC 26 1 1 14.3723 ATCTCATCGA 27 1 1 13.9891 ATCTCATCAC 28 1 1 13.5335 ATCTCATCAC 29 1 1 13.5335 ACCTCATCGA 30 1 1 13.5909 ACCTCATCGA 31 1 1 13.5909 AGCTCATCTT 32 1 1 12.6083 AGCTCATCTT 33 1 1 12.6083 CTCTCATCTC 34 1 1 12.816 TCCTCATCTC 35 1 1 12.3074 TCCTCATCTC 36 1 1 12.3074 ********** Motif Average: 16.1259 Std. Dev.: 2.2002 There are 430 sites scoring better than this cutoff. Sites: 10 203 0 AGCTCATCGC 18.579 100 296 1 AGCTCATCGC 18.579 1698 312 1 AGCTCATCGC 18.579 3809 369 0 AGCTCATCGC 18.579 3824 365 1 AGCTCATCGC 18.579 4153 180 0 AGCTCATCGC 18.579 4193 99 1 AGCTCATCGC 18.579 4196 223 0 AGCTCATCGC 18.579 4282 143 1 AGCTCATCGC 18.579 4300 183 0 AGCTCATCGC 18.579 4475 115 0 AGCTCATCGC 18.579 1879 376 1 AGCTCATCGC 18.579 1905 566 0 AGCTCATCGC 18.579 1958 167 1 AGCTCATCGC 18.579 1973 205 1 AGCTCATCGC 18.579 2048 106 1 AGCTCATCGC 18.579 267 158 0 AGCTCATCGC 18.579 692 204 0 AGCTCATCGC 18.579 2072 205 0 AGCTCATCGC 18.579 2076 84 0 AGCTCATCGC 18.579 745 219 0 AGCTCATCGC 18.579 277 660 0 AGCTCATCGC 18.579 749 130 0 AGCTCATCGC 18.579 2253 399 0 AGCTCATCGC 18.579 337 334 1 AGCTCATCGC 18.579 2332 177 0 AGCTCATCGC 18.579 2469 389 1 AGCTCATCGC 18.579 2542 122 0 AGCTCATCGC 18.579 2609 398 1 AGCTCATCGC 18.579 356 359 0 AGCTCATCGC 18.579 2612 249 0 AGCTCATCGC 18.579 2637 132 1 AGCTCATCGC 18.579 2667 94 0 AGCTCATCGC 18.579 2682 113 1 AGCTCATCGC 18.579 2723 116 0 AGCTCATCGC 18.579 974 297 0 AGCTCATCGC 18.579 2758 125 1 AGCTCATCGC 18.579 1006 394 0 AGCTCATCGC 18.579 2827 198 1 AGCTCATCGC 18.579 2909 367 1 AGCTCATCGC 18.579 2986 169 0 AGCTCATCGC 18.579 469 106 0 AGCTCATCGC 18.579 3102 156 0 AGCTCATCGC 18.579 3207 406 0 AGCTCATCGC 18.579 3271 225 0 AGCTCATCGC 18.579 3358 119 1 AGCTCATCGC 18.579 1323 547 0 AGCTCATCGC 18.579 3490 123 1 AGCTCATCGC 18.579 3551 319 1 AGCTCATCGC 18.579 3579 620 0 AGCTCATCGC 18.579 3585 589 0 AGCTCATCGC 18.579 478 195 0 AGCTCATCGC 18.579 3677 301 0 AGCTCATCGC 18.579 3745 209 0 AGCTCATCGC 18.579 3758 618 1 AGCTCATCGC 18.579 4049 153 1 ATCTCATCGC 17.5037 1654 151 0 ATCTCATCGC 17.5037 4112 122 0 ATCTCATCGC 17.5037 4258 483 0 ATCTCATCGC 17.5037 4339 207 1 ATCTCATCGC 17.5037 1559 292 0 ATCTCATCGC 17.5037 1710 146 0 ATCTCATCGC 17.5037 1740 351 0 ATCTCATCGC 17.5037 1765 267 1 ATCTCATCGC 17.5037 1770 374 0 ATCTCATCGC 17.5037 1792 438 0 ATCTCATCGC 17.5037 1891 152 1 ATCTCATCGC 17.5037 641 279 1 ATCTCATCGC 17.5037 1912 239 0 ATCTCATCGC 17.5037 1942 193 1 ATCTCATCGC 17.5037 656 168 0 ATCTCATCGC 17.5037 1957 329 1 ATCTCATCGC 17.5037 2129 190 0 ATCTCATCGC 17.5037 2245 149 1 ATCTCATCGC 17.5037 2296 126 0 ATCTCATCGC 17.5037 116 523 0 ATCTCATCGC 17.5037 2368 162 0 ATCTCATCGC 17.5037 815 253 0 ATCTCATCGC 17.5037 896 702 0 ATCTCATCGC 17.5037 945 283 0 ATCTCATCGC 17.5037 2743 194 0 ATCTCATCGC 17.5037 383 129 1 ATCTCATCGC 17.5037 2797 217 1 ATCTCATCGC 17.5037 385 148 0 ATCTCATCGC 17.5037 1062 170 1 ATCTCATCGC 17.5037 3039 104 1 ATCTCATCGC 17.5037 1136 394 0 ATCTCATCGC 17.5037 1139 176 0 ATCTCATCGC 17.5037 3274 146 0 ATCTCATCGC 17.5037 3316 155 1 ATCTCATCGC 17.5037 1231 255 0 ATCTCATCGC 17.5037 3400 393 0 ATCTCATCGC 17.5037 3452 297 1 ATCTCATCGC 17.5037 3485 68 1 ATCTCATCGC 17.5037 1244 124 1 ATCTCATCGC 17.5037 3615 169 0 ATCTCATCGC 17.5037 3626 195 1 ATCTCATCGC 17.5037 1376 243 0 ATCTCATCGC 17.5037 3669 93 1 ATCTCATCGC 17.5037 3695 213 0 ATCTCATCGC 17.5037 1458 165 0 ATCTCATCGC 17.5037 1460 117 1 ACCTCATCGC 17.1054 3917 144 0 ACCTCATCGC 17.1054 1522 221 1 ACCTCATCGC 17.1054 1795 389 1 ACCTCATCGC 17.1054 1894 140 1 ACCTCATCGC 17.1054 641 220 1 ACCTCATCGC 17.1054 1972 165 1 ACCTCATCGC 17.1054 725 721 0 ACCTCATCGC 17.1054 353 198 0 ACCTCATCGC 17.1054 2733 23 1 ACCTCATCGC 17.1054 973 440 0 ACCTCATCGC 17.1054 2800 217 1 ACCTCATCGC 17.1054 1254 425 0 ACCTCATCGC 17.1054 1277 370 1 ACCTCATCGC 17.1054 3519 129 0 ACCTCATCGC 17.1054 3566 339 1 ACCTCATCGC 17.1054 1341 362 0 ACCTCATCGC 17.1054 3795 82 0 ACCTCATCGC 17.1054 571 68 0 AGCTCATCTC 17.0227 182 218 0 AGCTCATCTC 17.0227 4005 122 1 AGCTCATCTC 17.0227 4035 132 0 AGCTCATCTC 17.0227 571 83 0 AGCTCATCTC 17.0227 1687 297 1 AGCTCATCTC 17.0227 4420 89 0 AGCTCATCTC 17.0227 1858 14 1 AGCTCATCTC 17.0227 1869 195 0 AGCTCATCTC 17.0227 1891 147 1 AGCTCATCTC 17.0227 248 224 1 AGCTCATCTC 17.0227 668 224 1 AGCTCATCTC 17.0227 2052 7 0 AGCTCATCTC 17.0227 4288 78 0 AGCTCATCTC 17.0227 761 174 0 AGCTCATCTC 17.0227 2308 366 1 AGCTCATCTC 17.0227 2358 134 0 AGCTCATCTC 17.0227 2485 169 0 AGCTCATCTC 17.0227 2637 333 0 AGCTCATCTC 17.0227 126 149 0 AGCTCATCTC 17.0227 1018 100 0 AGCTCATCTC 17.0227 3080 283 1 AGCTCATCTC 17.0227 3128 243 0 AGCTCATCTC 17.0227 434 409 0 AGCTCATCTC 17.0227 1139 181 0 AGCTCATCTC 17.0227 3349 348 0 AGCTCATCTC 17.0227 146 73 1 AGCTCATCTC 17.0227 3746 414 1 AGCTCATCTC 17.0227 3411 207 1 ATCTCATCTC 15.9473 3946 76 1 ATCTCATCTC 15.9473 3747 178 1 ATCTCATCTC 15.9473 1654 156 0 ATCTCATCTC 15.9473 4097 636 1 ATCTCATCTC 15.9473 4258 488 0 ATCTCATCTC 15.9473 4442 240 0 ATCTCATCTC 15.9473 4442 235 0 ATCTCATCTC 15.9473 4420 79 0 ATCTCATCTC 15.9473 1687 302 1 ATCTCATCTC 15.9473 1697 198 0 ATCTCATCTC 15.9473 4420 84 0 ATCTCATCTC 15.9473 633 310 1 ATCTCATCTC 15.9473 2945 179 1 ATCTCATCTC 15.9473 2945 174 1 ATCTCATCTC 15.9473 2945 169 1 ATCTCATCTC 15.9473 633 315 1 ATCTCATCTC 15.9473 4339 202 1 ATCTCATCTC 15.9473 633 320 1 ATCTCATCTC 15.9473 633 325 1 ATCTCATCTC 15.9473 1786 164 1 ATCTCATCTC 15.9473 633 330 1 ATCTCATCTC 15.9473 110 84 1 ATCTCATCTC 15.9473 4355 395 1 ATCTCATCTC 15.9473 522 232 1 ATCTCATCTC 15.9473 116 508 0 ATCTCATCTC 15.9473 4318 161 1 ATCTCATCTC 15.9473 700 91 0 ATCTCATCTC 15.9473 3747 183 1 ATCTCATCTC 15.9473 2233 180 1 ATCTCATCTC 15.9473 761 169 0 ATCTCATCTC 15.9473 2308 376 1 ATCTCATCTC 15.9473 2759 238 0 ATCTCATCTC 15.9473 2308 371 1 ATCTCATCTC 15.9473 1395 423 1 ATCTCATCTC 15.9473 2556 88 1 ATCTCATCTC 15.9473 896 707 0 ATCTCATCTC 15.9473 2559 199 0 ATCTCATCTC 15.9473 949 195 1 ATCTCATCTC 15.9473 949 200 1 ATCTCATCTC 15.9473 2750 382 1 ATCTCATCTC 15.9473 2754 251 1 ATCTCATCTC 15.9473 2759 233 0 ATCTCATCTC 15.9473 2805 60 1 ATCTCATCTC 15.9473 4097 631 1 ATCTCATCTC 15.9473 1018 95 0 ATCTCATCTC 15.9473 2925 341 1 ATCTCATCTC 15.9473 1040 214 0 ATCTCATCTC 15.9473 2945 184 1 ATCTCATCTC 15.9473 3672 54 1 ATCTCATCTC 15.9473 3139 310 1 ATCTCATCTC 15.9473 3139 315 1 ATCTCATCTC 15.9473 3139 320 1 ATCTCATCTC 15.9473 3241 210 0 ATCTCATCTC 15.9473 3400 398 0 ATCTCATCTC 15.9473 3452 292 1 ATCTCATCTC 15.9473 3446 413 1 ATCTCATCTC 15.9473 3946 81 1 ATCTCATCTC 15.9473 3588 389 1 ATCTCATCTC 15.9473 3517 167 0 ATCTCATCTC 15.9473 3573 214 0 ATCTCATCTC 15.9473 213 275 1 ACCTCATCTC 15.5491 4084 316 0 ACCTCATCTC 15.5491 4128 253 1 ACCTCATCTC 15.5491 1675 83 1 ACCTCATCTC 15.5491 1231 260 0 ACCTCATCTC 15.5491 1492 113 1 ACCTCATCTC 15.5491 4276 742 0 ACCTCATCTC 15.5491 277 572 1 ACCTCATCTC 15.5491 2211 255 1 ACCTCATCTC 15.5491 2281 233 1 ACCTCATCTC 15.5491 3158 205 0 ACCTCATCTC 15.5491 2559 204 0 ACCTCATCTC 15.5491 948 195 0 ACCTCATCTC 15.5491 2743 199 0 ACCTCATCTC 15.5491 2805 55 1 ACCTCATCTC 15.5491 3093 214 1 ACCTCATCTC 15.5491 1165 184 0 ACCTCATCTC 15.5491 1341 250 1 ACCTCATCTC 15.5491 178 471 0 ACCTCATCTC 15.5491 3573 219 0 ACCTCATCTC 15.5491 2171 66 0 CGCTCATCGC 15.4477 3544 244 0 TGCTCATCGC 15.3373 601 223 0 TGCTCATCGC 15.3373 3797 139 0 TGCTCATCGC 15.3373 3495 121 0 TGCTCATCGC 15.3373 2842 122 0 TGCTCATCGC 15.3373 772 57 0 TGCTCATCGC 15.3373 2507 187 0 TGCTCATCGC 15.3373 4446 380 1 TGCTCATCGC 15.3373 2804 162 0 TGCTCATCGC 15.3373 399 125 0 TGCTCATCGC 15.3373 3340 546 0 TGCTCATCGC 15.3373 3375 418 1 TGCTCATCGC 15.3373 3418 692 0 TGCTCATCGC 15.3373 3586 283 1 TGCTCATCGC 15.3373 3707 68 1 TGCTCATCGC 15.3373 531 78 1 AGCTCATCGA 15.0644 3874 160 1 AGCTCATCGA 15.0644 3417 149 0 AGCTCATCGA 15.0644 3902 170 1 AGCTCATCGA 15.0644 2891 529 0 AGCTCATCGA 15.0644 267 58 1 AGCTCATCGA 15.0644 2096 272 0 AGCTCATCGA 15.0644 2164 221 1 AGCTCATCGA 15.0644 2379 225 0 AGCTCATCGA 15.0644 340 230 0 AGCTCATCGA 15.0644 3700 150 0 AGCTCATCGA 15.0644 2577 48 0 AGCTCATCGA 15.0644 963 381 0 AGCTCATCGA 15.0644 28 115 1 AGCTCATCGA 15.0644 1096 148 1 AGCTCATCGA 15.0644 3443 67 0 AGCTCATCGA 15.0644 3654 146 0 AGCTCATCGA 15.0644 4030 57 0 AGCTCATCGA 15.0644 1506 279 0 AGCTCATCAC 14.6088 3325 39 1 AGCTCATCAC 14.6088 2398 128 0 AGCTCATCAC 14.6088 2908 166 1 AGCTCATCAC 14.6088 3291 132 1 AGCTCATCAC 14.6088 1714 249 1 CTCTCATCGC 14.3723 240 171 0 CTCTCATCGC 14.3723 436 120 1 CTCTCATCGC 14.3723 1355 193 0 CTCTCATCGC 14.3723 914 574 1 CTCTCATCGC 14.3723 3219 426 1 CTCTCATCGC 14.3723 1088 39 0 TTCTCATCGC 14.262 740 238 1 TTCTCATCGC 14.262 4242 274 0 TTCTCATCGC 14.262 881 375 0 TTCTCATCGC 14.262 2728 76 1 TTCTCATCGC 14.262 135 388 1 TTCTCATCGC 14.262 1135 208 0 AGCTCATCGT 14.1646 2460 3 1 AGCTCATCGT 14.1646 2697 18 0 AGCTCATCGT 14.1646 1290 73 0 ATCTCATCGA 13.9891 2930 291 1 ATCTCATCGA 13.9891 1823 26 0 ATCTCATCGA 13.9891 1869 190 0 ATCTCATCGA 13.9891 3509 106 1 ATCTCATCGA 13.9891 2526 473 1 ATCTCATCGA 13.9891 2281 238 1 ATCTCATCGA 13.9891 2559 194 0 ATCTCATCGA 13.9891 126 144 0 ATCTCATCGA 13.9891 798 198 0 ATCTCATCGA 13.9891 800 551 0 ATCTCATCGA 13.9891 2165 163 0 ATCTCATCGA 13.9891 907 378 1 ATCTCATCGA 13.9891 440 2 1 ATCTCATCGA 13.9891 1907 394 0 CCCTCATCGC 13.9741 1675 222 0 CCCTCATCGC 13.9741 2787 233 1 CCCTCATCGC 13.9741 3928 248 0 CCCTCATCGC 13.9741 3560 76 0 TCCTCATCGC 13.8637 1700 142 1 TCCTCATCGC 13.8637 3814 147 0 TCCTCATCGC 13.8637 86 400 1 TCCTCATCGC 13.8637 1568 150 1 TCCTCATCGC 13.8637 766 335 1 TCCTCATCGC 13.8637 4463 1 1 TGCTCATCTC 13.7809 4004 155 0 TGCTCATCTC 13.7809 1373 211 0 TGCTCATCTC 13.7809 3032 194 1 TGCTCATCTC 13.7809 634 705 1 TGCTCATCTC 13.7809 464 123 1 TGCTCATCTC 13.7809 1163 475 0 TGCTCATCTC 13.7809 2412 376 0 TGCTCATCTC 13.7809 573 85 1 TGCTCATCTC 13.7809 1376 248 0 TGCTCATCTC 13.7809 4470 9 1 TGCTCATCTC 13.7809 4049 148 1 TGCTCATCTC 13.7809 3655 59 1 ACCTCATCGA 13.5909 3896 405 1 ACCTCATCGA 13.5909 1214 444 1 ACCTCATCGA 13.5909 4077 377 1 ACCTCATCGA 13.5909 2245 233 0 ACCTCATCGA 13.5909 3626 106 1 ACCTCATCGA 13.5909 4246 16 1 ACCTCATCGA 13.5909 3747 188 1 ATCTCATCAC 13.5335 2256 339 1 ATCTCATCAC 13.5335 634 710 1 ATCTCATCAC 13.5335 3032 199 1 ATCTCATCAC 13.5335 2910 420 0 ATCTCATCAC 13.5335 2892 270 0 ATCTCATCAC 13.5335 3798 168 0 ATCTCATCAC 13.5335 1687 135 0 ATCTCATCAC 13.5335 4064 365 0 ATCTCATCAC 13.5335 2407 236 0 ATCTCATCAC 13.5335 1512 34 1 ATCTCATCAC 13.5335 491 205 1 ATCTCATCAC 13.5335 3588 394 1 ATCTCATCAC 13.5335 2324 315 0 AGCTCATCTA 13.5081 2974 657 0 AGCTCATCTA 13.5081 2542 128 1 AGCTCATCTA 13.5081 3814 119 0 AGCTCATCTA 13.5081 4438 220 0 AGCTCATCTA 13.5081 3468 313 0 AGCTCATCTA 13.5081 3165 435 0 ACCTCATCAC 13.1352 1531 378 0 ACCTCATCAC 13.1352 3181 149 1 ACCTCATCAC 13.1352 2742 16 1 ACCTCATCAC 13.1352 4230 73 1 ACCTCATCAC 13.1352 423 146 1 ATCTCATCGT 13.0893 1724 126 1 ATCTCATCGT 13.0893 3005 238 0 ATCTCATCGT 13.0893 4318 166 1 ATCTCATCGT 13.0893 1697 193 0 ATCTCATCGT 13.0893 1114 101 0 ATCTCATCGT 13.0893 1994 140 0 ATCTCATCGT 13.0893 1444 165 0 ATCTCATCGT 13.0893 3839 419 1 ATCTCATCGT 13.0893 1236 90 0 CTCTCATCTC 12.816 3840 114 0 CTCTCATCTC 12.816 1721 375 1 CTCTCATCTC 12.816 2095 423 1 CTCTCATCTC 12.816 3808 183 0 CTCTCATCTC 12.816 1521 274 1 CTCTCATCTC 12.816 4035 125 0 CTCTCATCTC 12.816 2124 114 1 CTCTCATCTC 12.816 2165 527 0 TTCTCATCTC 12.7056 2562 88 1 TTCTCATCTC 12.7056 2556 128 0 TTCTCATCTC 12.7056 1654 161 0 TTCTCATCTC 12.7056 4274 201 0 TTCTCATCTC 12.7056 3669 88 1 TTCTCATCTC 12.7056 2508 12 0 TTCTCATCTC 12.7056 4057 193 0 TTCTCATCTC 12.7056 3287 392 1 TTCTCATCTC 12.7056 3462 91 0 TTCTCATCTC 12.7056 2056 409 1 TTCTCATCTC 12.7056 2070 162 1 TTCTCATCTC 12.7056 2753 419 0 TTCTCATCTC 12.7056 1335 179 1 TTCTCATCTC 12.7056 2506 269 0 TTCTCATCTC 12.7056 4219 61 0 ACCTCATCGT 12.6911 3456 195 0 AGCTCATCTT 12.6083 3626 216 0 AGCTCATCTT 12.6083 3588 160 0 AGCTCATCTT 12.6083 1340 114 1 AGCTCATCTT 12.6083 2133 43 0 ATCTCATCTA 12.4328 4240 433 1 ATCTCATCTA 12.4328 1745 152 0 ATCTCATCTA 12.4328 3104 86 0 ATCTCATCTA 12.4328 3181 140 1 ATCTCATCTA 12.4328 3446 418 1 ATCTCATCTA 12.4328 1005 168 1 CCCTCATCTC 12.4177 3686 234 0 CCCTCATCTC 12.4177 3082 139 1 TCCTCATCTC 12.3074 3757 439 0 TCCTCATCTC 12.3074 3082 192 1 TCCTCATCTC 12.3074 3691 147 1 TCCTCATCTC 12.3074 1913 352 0 TCCTCATCTC 12.3074 57 299 0 TCCTCATCTC 12.3074 3464 939 0 TCCTCATCTC 12.3074 4241 201 0 TCCTCATCTC 12.3074 191 46 0 TCCTCATCTC 12.3074 3928 225 0 AACTCATCGC 12.0796 597 96 1 AACTCATCGC 12.0796 2651 115 1 AACTCATCGC 12.0796 2186 77 1 AACTCATCGC 12.0796 2669 191 1 AACTCATCGC 12.0796 1806 674 0 AACTCATCGC 12.0796 4419 76 1 AACTCATCGC 12.0796 371 46 1 AACTCATCGC 12.0796 1209 124 0 AACTCATCGC 12.0796 3932 718 1 AACTCATCGC 12.0796 2690 434 1 AACTCATCGC 12.0796 689 134 1 AACTCATCGC 12.0796 4282 178 1 ACCTCATCTA 12.0345 3082 17 1 ACCTCATCTA 12.0345 4234 53 0 ACCTCATCTA 12.0345 573 149 1 GGCTCATCGC 11.9208 2696 319 0 GGCTCATCGC 11.9208 2143 479 1 GGCTCATCGC 11.9208 3132 153 0 GGCTCATCGC 11.9208 4371 124 1 GGCTCATCGC 11.9208 2903 378 1 TGCTCATCGA 11.8227 2752 109 1 TGCTCATCGA 11.8227 1331 154 1 TGCTCATCGA 11.8227 2226 375 0 TGCTCATCGA 11.8227 391 276 1 TGCTCATCGA 11.8227 1673 231 0 TGCTCATCGA 11.8227 1636 51 1 TGCTCATCGA 11.8227