Tim Ting Chen's Publications
Publications
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A Case Study in Genome-Level Fragment Assembly.
(Ting Chen and Steven Skiena).
To appear at Bioinformatics, 2000.
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A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem
Mass Spectrometry.
(Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush and George Church).
The 11th Annual SIAM-ACM Symposium on Discrete Algorithms
(SODA 2000), page 389-398, 2000.
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On the Informational Asymmetry between Upper and Lower Bounds
for Ultrametric Evolutionary Trees.
(Ting Chen and Ming-Yang Kao).
The 7th Annual European Symposium on Algorithms (ESA'99), Page 248-256, 1999.
LNCS, Lecture Notes in Computer Science, Springer-Verlag.
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Identifying gene regulartory networks from experimental data.
(Ting Chen, Vladimir Filkov and Steven S. Skiena).
ACM-SIGACT The Third Annual International Conference on Computational
Moledular Biology (RECOMB99), page 94-103, 1999.
- Modeling Gene Expression with Differential
Equations.
(Ting Chen, Hongyu L. He, and George M. Church).
Pacific Symposium on Biocomputing (PSB99), Page 29-40, 1999.
- Pombe: A Fission Yeast gene-finding and exon-intron structure prediction system. (Ting Chen and Michael Q. Zhang).
Yeast, Vol. 14: 701-710, 1998.
- Trie-based data structures for fragment assembly, (Ting Chen and Steven S. Skiena).
The Eighth Symposium on Combinatorial Pattern Matching (CPM97), page 206-223, 1997.
- Sorting with fixed-length reversals. (Ting Chen and Steven Skiena).
Journal of Discrete Applied Mathematics, Special Volume on Computational Molecular Biology, page 269-296, vol.71, December 5 1996.
- Computational Genome Analysis(Ting Chen). PHD Thesis, 1997.
- How Good is Genome-Level Fragment Assembly? (Ting Chen and Steven Skiena).
Technical Report 1997.
- Incremental Model Checking in the Modal Mu-Calculus. (with Oleg Sokolsky and Scott Smolka).
1996. Technical Report.
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