Resequencing analysis for Gene: EML5


There are 3 sections to this alignment:
  - resequencing alignment (unspliced, by construction)
  - Our alignments (spliced for coding sequence)
  - Alignments of ref. [1] (spliced for coding sequence)

Note that:
  - these alignments should be taken in context with whole protein alignment. Spliced alignments may be interrupted by splicing events.
  - Putative signal of positive selection is shown in blue.

                    .... ....|1... ....|2... ....|3... ....|4... ....|5... ....|6... ....|7... ....|8... ....|9... ....|10.. ....|11.. ....|12.. ....|13.. ....|14.. ....|
reseq__B8_chimpF80  -GGGAGGTGTGAGAG-CTCAGTG--AGGCACTG-AGTGGCTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF8   -GGAGGGTGTGAGAGGCTCAGTGA--GGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_chimpF68  -----CTGCTGCAGAGCTCAGTG--AGGCACTGAAGTG-CTGCATGCCTTTTCCTCCTCCCCCACTTTCTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCTACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_chimpF92  -------GTGTGAGAGCTCAGTGGAAGGCACTGGAGTG-CTGCATGCCTTTTCCTCCCTCCCCACTTTCTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_chimpF8   GGAGAGGTGTGAGAG-CTCAGTGA--GGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_chimpF44  CGGAGGGTGTGAGAG-CTCAGTGA--GGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF20  --AGAGGTGTGAGAGGCTCAGTG--AAGCACTG-AGTGGCTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF44  ----GCGCGTGAGAGGCTCAGTGGAAGGCACTGAAGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF68  ----AGGTGTGAGAGGCTCAGTGA-AGGCACTG-AGTGGCTGCATG-CCTTTCCTCCCTCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF32  ----TGGTGTGAGAGGCTCAGTGGAAGGCACTGAAGAG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF80  -GGGAGGTGTGAGAGGCTCAGTGT-AGGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTGTGGTGCAGGCCTCCAGTGAGCAGGGCCCC-CCTCACCCGGAGAAATTCCAGACAAACATTGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF92  -TTGTGGTGTGAGAGGCTCAGTG--AGGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_chimpF56  CACGAGGTGTGAGAG-CTCAGTG--AGGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_chimpF20  --AGTGGTGTGAGAAGCTCAGTGA-AGGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_chimpF32  --------GTGAGAAGCTCAGTGGAAGGCACTGAAGTGGCTGCATGGCCTTTCCTCCCTCCCCACTTTCTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF56  ----TGGTGTGAGAGGCTCAGTGGAAGGCACTGAAGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
primer_B8           --GATGGTGTGAGANGCTCAGTGA-AGGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
# Our alignments (spliced for proteins)
human_dna           -----------------------------------------------------------------------------AGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
chimp_dna           -----------------------------------------------------------------------------AGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
macaque_dna         -----------------------------------------------------------------------------AGGCCTCCGGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
# Ref.[1] alignments (spliced for proteins)
ENSP00000298315     -------------------------------------------------------------------------------------------------------------------------G---AACAATGTAGGCAAGAA------AC
ENSPTRP00000011248  -------------------------------------------------------------------------------------------------------------------------G---CCTCATTTACAACAAAA------AT
ENSMMUP00000006130  -------------------------------------------------------------------------------------------------------------------------G---AACAATGTAGGCAAGAA------AC

                    15.. ....|16.. ....|17.. ....|18.. .
reseq__B8_chimpF80  CTATAGAGGTAAGGAAAACTCACTCTCCAAGATA--
reseq__B8_humanF8   CTATAGAGGTAAGGAAAACTCACTCTCCAAAGT---
reseq__B8_chimpF68  CTATAGAGGTAAGGAA-CCTCACTCTCCAAAAGGG-
reseq__B8_chimpF92  CTATAGAGGTAAGGAAACCTCACTCTCCAGATTG--
reseq__B8_chimpF8   CTATAGAGGTAAGGAAAACTCACTCTCCAAA-----
reseq__B8_chimpF44  CTATAGAGGTAAGGAAA-CTCACTCTCCTGAATAG-
reseq__B8_humanF20  CTATAGAGGTAAGGA-AACTCACTCTCCATGATTT-
reseq__B8_humanF44  CTATAGAGGTAAGGAAACCTCACTCTCCAAGATT--
reseq__B8_humanF68  CTATAGAGGTAAGGA-AACTCACTCTCCAAAAATG-
reseq__B8_humanF32  CTATAGAGGTAAGGAAACCTCACTCTCCAAAGGG--
reseq__B8_humanF80  CTATAAAGGTAGGGTTGACTCACTCTCCAAAAAG--
reseq__B8_humanF92  CTATAGAGGTAAGGA-AACTCACTCTCC-TGATTTG
reseq__B8_chimpF56  CTATAGAGGTAAGGAAAACTCACTCTCCAA------
reseq__B8_chimpF20  CTATAGAGGTAAGGA-AACTCACTCTCCAAATTGT-
reseq__B8_chimpF32  CTATAGAGGTAAGGAAACCTCACTCTCCATGAGT--
reseq__B8_humanF56  CTATAGAGGTAAGGAAACCTCACTCTCCAAGAGT--
primer_B8           CTATAGAGGTAAGGAAAACTCACTCTCCAGTGT---
# Our alignments (spliced for proteins)
human_dna           CTATA-------------------------------
chimp_dna           CTATA-------------------------------
macaque_dna         CTATA-------------------------------
# Ref.[1] alignments (spliced for proteins)
ENSP00000298315     CTATA-------------------------------
ENSPTRP00000011248  CAATT-------------------------------
ENSMMUP00000006130  CTATA-------------------------------