Resequencing analysis for Gene: EML5
There are 3 sections to this alignment:
- resequencing alignment (unspliced, by construction)
- Our alignments (spliced for coding sequence)
- Alignments of ref. [1] (spliced for coding sequence)
Note that:
- these alignments should be taken in context with whole protein alignment. Spliced alignments may be interrupted by splicing events.
- Putative signal of positive selection is shown in blue.
.... ....|1... ....|2... ....|3... ....|4... ....|5... ....|6... ....|7... ....|8... ....|9... ....|10.. ....|11.. ....|12.. ....|13.. ....|14.. ....|
reseq__B8_chimpF80 -GGGAGGTGTGAGAG-CTCAGTG--AGGCACTG-AGTGGCTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF8 -GGAGGGTGTGAGAGGCTCAGTGA--GGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_chimpF68 -----CTGCTGCAGAGCTCAGTG--AGGCACTGAAGTG-CTGCATGCCTTTTCCTCCTCCCCCACTTTCTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCTACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_chimpF92 -------GTGTGAGAGCTCAGTGGAAGGCACTGGAGTG-CTGCATGCCTTTTCCTCCCTCCCCACTTTCTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_chimpF8 GGAGAGGTGTGAGAG-CTCAGTGA--GGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_chimpF44 CGGAGGGTGTGAGAG-CTCAGTGA--GGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF20 --AGAGGTGTGAGAGGCTCAGTG--AAGCACTG-AGTGGCTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF44 ----GCGCGTGAGAGGCTCAGTGGAAGGCACTGAAGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF68 ----AGGTGTGAGAGGCTCAGTGA-AGGCACTG-AGTGGCTGCATG-CCTTTCCTCCCTCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF32 ----TGGTGTGAGAGGCTCAGTGGAAGGCACTGAAGAG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF80 -GGGAGGTGTGAGAGGCTCAGTGT-AGGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTGTGGTGCAGGCCTCCAGTGAGCAGGGCCCC-CCTCACCCGGAGAAATTCCAGACAAACATTGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF92 -TTGTGGTGTGAGAGGCTCAGTG--AGGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_chimpF56 CACGAGGTGTGAGAG-CTCAGTG--AGGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_chimpF20 --AGTGGTGTGAGAAGCTCAGTGA-AGGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_chimpF32 --------GTGAGAAGCTCAGTGGAAGGCACTGAAGTGGCTGCATGGCCTTTCCTCCCTCCCCACTTTCTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
reseq__B8_humanF56 ----TGGTGTGAGAGGCTCAGTGGAAGGCACTGAAGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
primer_B8 --GATGGTGTGAGANGCTCAGTGA-AGGCACTG-AGTG-CTGCATG-CCTTTCCTCC-TCCCCACTT-CTCTGTTGCAGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
# Our alignments (spliced for proteins)
human_dna -----------------------------------------------------------------------------AGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
chimp_dna -----------------------------------------------------------------------------AGGCCTCCAGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
macaque_dna -----------------------------------------------------------------------------AGGCCTCCGGTGAGCAGGGCCCCACCACAGCCAGAGAAACTCCAGACAAACAATGTAGGCAAGAAAAAGAGAC
# Ref.[1] alignments (spliced for proteins)
ENSP00000298315 -------------------------------------------------------------------------------------------------------------------------G---AACAATGTAGGCAAGAA------AC
ENSPTRP00000011248 -------------------------------------------------------------------------------------------------------------------------G---CCTCATTTACAACAAAA------AT
ENSMMUP00000006130 -------------------------------------------------------------------------------------------------------------------------G---AACAATGTAGGCAAGAA------AC
15.. ....|16.. ....|17.. ....|18.. .
reseq__B8_chimpF80 CTATAGAGGTAAGGAAAACTCACTCTCCAAGATA--
reseq__B8_humanF8 CTATAGAGGTAAGGAAAACTCACTCTCCAAAGT---
reseq__B8_chimpF68 CTATAGAGGTAAGGAA-CCTCACTCTCCAAAAGGG-
reseq__B8_chimpF92 CTATAGAGGTAAGGAAACCTCACTCTCCAGATTG--
reseq__B8_chimpF8 CTATAGAGGTAAGGAAAACTCACTCTCCAAA-----
reseq__B8_chimpF44 CTATAGAGGTAAGGAAA-CTCACTCTCCTGAATAG-
reseq__B8_humanF20 CTATAGAGGTAAGGA-AACTCACTCTCCATGATTT-
reseq__B8_humanF44 CTATAGAGGTAAGGAAACCTCACTCTCCAAGATT--
reseq__B8_humanF68 CTATAGAGGTAAGGA-AACTCACTCTCCAAAAATG-
reseq__B8_humanF32 CTATAGAGGTAAGGAAACCTCACTCTCCAAAGGG--
reseq__B8_humanF80 CTATAAAGGTAGGGTTGACTCACTCTCCAAAAAG--
reseq__B8_humanF92 CTATAGAGGTAAGGA-AACTCACTCTCC-TGATTTG
reseq__B8_chimpF56 CTATAGAGGTAAGGAAAACTCACTCTCCAA------
reseq__B8_chimpF20 CTATAGAGGTAAGGA-AACTCACTCTCCAAATTGT-
reseq__B8_chimpF32 CTATAGAGGTAAGGAAACCTCACTCTCCATGAGT--
reseq__B8_humanF56 CTATAGAGGTAAGGAAACCTCACTCTCCAAGAGT--
primer_B8 CTATAGAGGTAAGGAAAACTCACTCTCCAGTGT---
# Our alignments (spliced for proteins)
human_dna CTATA-------------------------------
chimp_dna CTATA-------------------------------
macaque_dna CTATA-------------------------------
# Ref.[1] alignments (spliced for proteins)
ENSP00000298315 CTATA-------------------------------
ENSPTRP00000011248 CAATT-------------------------------
ENSMMUP00000006130 CTATA-------------------------------