Resequencing analysis for Gene: HECW1

There are 3 sections to this alignment:
  - resequencing alignment (unspliced, by construction)
  - Our alignments (spliced for coding sequence)
  - Alignments of ref. [1] (spliced for coding sequence)

Note that:
  - these alignments should be taken in context with whole protein alignment. Spliced alignments may be interrupted by splicing events.
  - Putative signal of positive selection is shown in blue.

                    .... ....|1... ....|2... ....|3... ....|4... ....|5... ....|6... ....|7... ....|8... ....|9... ....|10.. ....|11.. ....|12.. ....|13.. ....|14.. ....|
reseq__B6_humanF66  -----CTCAGATTATTGATGTGACATATTCTTTCATT-C-CA-GCAATT-CAGTTTA--GAGT-CCTA-GCCCACA-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF54  -----------------------------CTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTTAGCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCCTGGGAAAGC
reseq__B6_humanF90  CACCTCTC-GTTA-TTGATGTGACATATTCTTT-ATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF42  -----------------------------CTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTTCGCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
primer_B6           ----------------------------TCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF90  ----------------------------TCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_humanF42  --ACTCTCAGTTA-TTGATGTGACATATTCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_humanF54  ---CTCTCAG-TTATTGATGTGACATATTCTTTCATTCG-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_humanF78  --CCTCTCAGTTA-TTGATGTGACATATTCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF66  ----------------------------TCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
primer_B6_human     ---CTCTCAGTTAATTGATGTGACATATTCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF18  ------------------------------TATCATTCG-CA-GCAATT-CAGTTTT--GTGT-CCTTTGCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF30  ----------------------------TCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF78  -------------------------------TTCATTTG-CA-GCAATTCCAGTTATT-GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_humanF30  --CCTCTCAGTTA-TTGATGTGACATATTCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_humanF18  ------------TGATGTGACATTATTTCCTTTCATTTGGCACGCAATTTCAGTTCTTAGTGTGCCTTTGCCCACTTGACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_humanF6   -----CTCAGATTATTGATGTGACATATTCTTTCATT-G-CA-GCAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
reseq__B6_chimpF6   --------A---------------------------------------------------------------------------------------------------------------------------------------------
# Our alignments (spliced for proteins)
human_dna           --------------------------------------------CAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
chimp_dna           --------------------------------------------CAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
macaque_dna         --------------------------------------------CAATT-CAGTTTT--GTGT-CCTT-GCCCACT-GACGTGCTGGAAATTGAGGTGAAGGACAAGTTTGCCAAGAGCCGTCCCATCATCAAGCGTTTCTTGGGAAAGC
# Ref.[1] alignments (spliced for proteins)
ENSP00000265522     -----------------------------------------------------------------------------GA---GC----AATT-----------C---TTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCTTGGGAAAGC
ENSPTRP00000032661  -----------------------------------------------------------------------------GA---GG----TGAA-----------G---TTTGCCAAGAGCCGCCCCATCATCAAGCGCTTCCTGGGAAAGC
ENSMMUP00000025005  -----------------------------------------------------------------------------GA---GC----AATT-----------C---TTTGCCAAGAGCCGTCCCATCATCAAGCGTTTCTTGGGAAAGC

                    15.. ....|16.. ....|17.. ....|18.. ....|19..
reseq__B6_humanF66  TGTCGATGCCCGTTCAAAGACTCTGGAAGAGACACGCCATGT--
reseq__B6_chimpF54  TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCAACG--
reseq__B6_humanF90  TGTCGATGCCCGTTCAAAGACTC-TGGAGAGACACGCCATGGT-
reseq__B6_chimpF42  TGTCGATGCCCGTTCAAAGACTCTGGAAGAGACACGCCACTC--
primer_B6           TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCATAG--
reseq__B6_chimpF90  TGTCGATGCCCGTTCAAAGACTCTGGAAGAGACACGCCACAG--
reseq__B6_humanF42  TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCACTC--
reseq__B6_humanF54  TGTCGATGCCCGTTCAAAGACTCTGGAAGAGACACGCCAATG--
reseq__B6_humanF78  TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCAATGG--
reseq__B6_chimpF66  TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCATGC--
primer_B6_human     TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCATAG--
reseq__B6_chimpF18  TGTCGATGCCCGTTCAAAGACTCCAGGAGAGACACGCCAAAC--
reseq__B6_chimpF30  TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCAACA--
reseq__B6_chimpF78  TGTCGATGCCCGTTCAAAGACTCCGGAAGAGACACGCCATAT--
reseq__B6_humanF30  TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCACTG--
reseq__B6_humanF18  TGTCGATGCCCGTTCAAAGACTCCGGGAGAGACACGCCATAT--
reseq__B6_humanF6   TGTCGATGCCCGTTCAAAGACTCTGGAAGAGACACGCCAACA--
reseq__B6_chimpF6   --------------------------------------------
# Our alignments (spliced for proteins)
human_dna           TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCC------
chimp_dna           TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCC------
macaque_dna         TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCC------
# Ref.[1] alignments (spliced for proteins)
ENSP00000265522     TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCATAGGG
ENSPTRP00000032661  TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCATAGGG
ENSMMUP00000025005  TGTCGATGCCCGTTCAAAGACTCCTGGAGAGACACGCCATAGGG