Resequencing analysis for Gene: C18orf25 (CR025)


There are 3 sections to this alignment:
  - resequencing alignment (unspliced, by construction)
  - Our alignments (spliced for coding sequence)
  - Alignments of ref. [1] (spliced for coding sequence)

Note that:
  - these alignments should be taken in context with whole protein alignment. Spliced alignments may be interrupted by splicing events.
  - Putative signal of positive selection is shown in blue.

                    .... ....|1... ....|2... ....|3... ....|4... ....|5... ....|6... ....|7... ....|8... ....|9... ....|10.. ....|11.. ....|12.. ....|13.. ....|14.. ....|
reseq__B5_humanF5   -TTTGAGACAGACAAAAGAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAAGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
reseq__B5_chimpF17  -TTGGAGACAGCCCAGAGAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAGGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
reseq__B5_humanF41  ---TGAGACAGCCAA-CGAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAAGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
reseq__B5_humanF53  GTTGGAGACAGCCAACA-AGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAAGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
reseq__B5_humanF89  TGTGGAGACAGCCACG-GAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAAGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
reseq__B5_chimpF77  --TGGAGACAGCCAAGAGAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAGGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
reseq__B5_chimpF89  -GTTGAGACAGCCAGG-GAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAGGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
primer_B5           ACAAGAGACAGCCAAG-GAGGAAGATGGATCTGTAGAACTGGAATCTCANGTTCAGAANGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
reseq__B5_humanF77  -TTTGAGACAGCCACG-GAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAAGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
reseq__B5_chimpF29  ---TGAGACAGCCATA-GAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAGGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
reseq__B5_humanF65  TTTTGAGACAGCCAA-GGAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAAGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
reseq__B5_chimpF53  --TGGAGACAGCCAAC-GAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAGGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
reseq__B5_chimpF65  -TTGGAGACAGCCAAAGGAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAGGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACACTTCTGAGTCTCAGTTAGCGTCCA
reseq__B5_chimpF41  ----GAGACAGCCAACAGAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAGGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
reseq__B5_chimpF5   ----GAGACTGCCAAC-AAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAGGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
reseq__B5_humanF17  -TTGGAGACAGCCAAACAAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAAGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
reseq__B5_humanF29  -TTGGAGACAGCCAAAAGAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAAGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTATTCTGAGTCTCAGTTAGCATCCA
# Our alignments (spliced for proteins)
human_dna           -CAAGAGACAGCCAAG-GAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAAGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
chimp_dna           -CAAGAGACAGCCAAG-GAGGAAGATGGATCTGTAGAACTGGAATCTCA-GTTCAGAAGGATGGTGTAGCGGATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
macaque_dna         -CAAGAGACAGCCAAG-GAGGAAGATGGATCTGTAGAACTGGAATCTCAAGTTCAGAAAGATGGTGTAGCGGATTCTACAGTGATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
# Ref.[1] alignments (spliced for proteins)
ENSP00000282059     --------------------------GGATCTGTAGAA---------------CAGAAAGAT---------GATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
ENSPTRP00000016992  --------------------------ATTCGATCTGAA---------------CAGAAGGAT---------GATTCTACAGTTATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA
ENSMMUP00000015055  --------------------------GGATCTGTAGAA---------------CAGAAAGAT---------GATTCTACAGTGATTTCTTCAATGCCCTGCTTGTTGATGGAACTGAGAAGGGACTCTTCTGAGTCTCAGTTAGCATCCA

                    15.. ....|16.. ....|17.. ....|18.. ....|19.. ....|20.. ....|21.. 
reseq__B5_humanF5   CAGAGGAGTGACAAA-GCCTACAAACTGGCCGGAAGTTTAATGAGAAGTGACTTCCT--------
reseq__B5_chimpF17  CAGAGA-GTGACAAG--CCTACAA-CTGGCCG-TAGTTTA-TGAGTAGTGACTTACTCTAAT---
reseq__B5_humanF41  CAGAGAAGTGACAAAGCCTTACAAACTGGCCG-AAGTTTA-TGAGGAGTGAT--CCTCTA-----
reseq__B5_humanF53  CAGAGA-GTGACAAG--CCTACAA-CTGGCCG--AGTTTA-TGAGGAGTGACT-CCTCTAATCA-
reseq__B5_humanF89  CAGAGA-GTGACAAG--CCTACAA-CTGGCCG--AGTTTA-TGAG-AGTGACT-CCTCTAATCAC
reseq__B5_chimpF77  CAGAGA-GTGACAAG--CCTACAA-CTGGCCG--AGTTTA-TGAG-AGTGACT-CCTCTAATCAC
reseq__B5_chimpF89  CAGAGA-GTGACAAG--CCTACAA-CTGGCCG--AGTTTA-TGAG-AGTGACT-CCTCTAATCAC
primer_B5           CAGAGA-GTGACAAG--CCTACAA-CTGGCCG--AGTTTA-TGAG-AGTGACT-CCTCTAATCAC
reseq__B5_humanF77  CAGAGA-GTGACAAG--CCTACAA-CTGGCCG--AGTTTA-TGAG-AGTGACT-CCTCTAATCAC
reseq__B5_chimpF29  CAGAGA-GTGACAAG--CCTACAA-CTGGCCG--AGTTTA-TGAG-AGTGACT-CCTCTAATCAC
reseq__B5_humanF65  CAGAGAAGTGACAAAGCCTTACAAACTGGCCG-AAGTTTA-TGAGGAGTGATT-CCTCT------
reseq__B5_chimpF53  CAGAGA-GTGACAAG--CCTACAA-CTGGCCG--AGTTTA-TGAG-AGTGACTTCCTCTAATCA-
reseq__B5_chimpF65  CAGAGAAGTGACAAAGCCGTACAAACTGGCCG-AAGTTTA-GGAGGAGTGAT--CCTCTA-----
reseq__B5_chimpF41  CAGAGA-GTGACAAG--CCTACAAACTGGCCG-GAGTTGAATGAGTAGTGATT-CCTCTAA----
reseq__B5_chimpF5   CAGAGA-GTGACTAG--CCTACAA-CTGGCCG-GAGTTTA-TGAG-AGT----------------
reseq__B5_humanF17  CAGAG-AGTGACAA--GCCTACAAACTGGCCG-AAGTTGAATGAGGAGTGATTACTTCTA-----
reseq__B5_humanF29  CAGAGA-GTGACAAG--CCTACAA-CTGGCCG--AGTTTA-TGAG-AGTGACTCCTCTAATCAC-
# Our alignments (spliced for proteins)
human_dna           CAGAGA-GTGACAAG--CCTACAA-CTGGCCG--AGTTTA-TGAG-AGTGACTCCTCTA------
chimp_dna           CAGAGA-GTGACAAG--CCTACAA-CTGGCCG--AGTTTA-TGAG-AGTGACTCCTCTA------
macaque_dna         CGGAGA-GTGACAAG--CCTACAA-CTGGCCG--AGTTTA-TGAG-AGTGACTCCTCTA------
# Ref.[1] alignments (spliced for proteins)
ENSP00000282059     CAGAGA-GTGACAAG--CCTACAA-CTGGCCG--AGTTTA-TGAG-AGTGACTCCTCTA------
ENSPTRP00000016992  CAGAGA-GTGACAAG--CCTACAA-CTGGCCG--AGTTTA-TGAG-AGTGACTCCTCTA------
ENSMMUP00000015055  CGGAGA-GTGACAAG--CCTACAA-CTGGCCG--AGTTTA-TGAG-AGTGACTCCTCTA------