Resequencing analysis for Gene: TEC


There are 3 sections to this alignment:
  - resequencing alignment (unspliced, by construction)
  - Our alignments (spliced for coding sequence)
  - Alignments of ref. [1] (spliced for coding sequence)

Note that:
  - these alignments should be taken in context with whole protein alignment. Spliced alignments may be interrupted by splicing events.
  - Putative signal of positive selection is shown in blue.

                    .... ....|1... ....|2... ....|3... ....|4... ....|5... ....|6... ....|7... ....|8... ....|9... ....|10.. ....|11.. ....|12.. ....|13.. ....|14.. ....|
reseq__B3_chimpF4   TTGAGATCATT-TATT-GGTGTCT-GTAGTACCAAGGG--TTC-----TGGGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF16  ----------TAACTAGAGTGTCTCGTAGTACCAAAGG--TTC-----AGAGCT--AGACAGAAG--AGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF76  -AGATCTTATT-TATTCTGTGTCT-GTAGTACCAAGGG--TTC-----TGTGCT--AGACAAAAT--TGCT-GTG--TCTAATTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAAGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF64  ---ATCTTATATTATTCGGTGTCT-GTAGTACCAAGGGG-TTC-----TGTGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF88  TAGATCTCATT-TATT-GGTGTCT-GTAGTACCAAGGG--TTC-----TGTGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF52  --GATCTTATAATATTCTATGACT-GTAGTACCAAGGG--TTC-----TGTGCT--AGACAAAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_chimpF28  ---------------------TCT-GTAGTACCAATGGGGTTTCCTAGAGGGCTTCGTACAGAAGGTCGCTCGTCGTCCTAAGTCCCTTCTTCCACCAATTTCCATCCTTCTCGTTTTATTTTAGGTC-TTCACGATGCTAACACACTTT
reseq__B3_chimpF52  TTGAGATCATT-TATT-GGTGTCT-GTAGTACCAAGGG--TTC-----TGGGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_chimpF40  -------CTTTTTATTGGGTGTCT-GTAGTACCAAAGGGTTCT-----CAGGCT--CGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_chimpF76  TTGAGATCATT-TATT-GGTGTCT-GTAGTACCAAGGG--TTC-----TGGGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF28  ---------TAATGTT-GGTGTCT-GTAGTACCAAAGG--TTC-----AGAGCT--AGACAGAAG--AGCTCGTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
primer_B3           TGAGAATCATT-TATT-GGTGTCT-GTAGTACCAAGGG--TTC-----TGNGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF4   --------------CGTGTCGTCTCGTAGTACCAAGGGT-TCT-----AGAGCT--AGACAGAAG--AGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF40  ------------TGAGGTGGTCTC-GTAGTACCAAGGG--TTC-----TGTGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_chimpF16  TTGAGATCATT-TATT-GGTGTCA-GTAGTACCAAAGG--TTC-----AGGGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_chimpF88  TTGAGATCATT-TATT-GGTGTCA-GTAGTACCAAGGG--TTC-----AAGGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_chimpF64  -------CTTTTTTATTGGTGTCT-GTAGTACCAAGGG--TTC-----AAGGCT--CGACAGAAG--AGCTCGAG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
# Our alignments (spliced for proteins)
human_dna           -----------------------------------------------------------------------------------------------------------------------------GTTGTTCATGATGCTAACACACTTT
chimp_dna           -----------------------------------------------------------------------------------------------------------------------------GTTGTTCATGATGCTAACACACTTT
macaque_dna         -----------------------------------------------------------------------------------------------------------------------------GTTGTTCATGATGCTAACACACTTT
# Ref.[1] alignments (spliced for proteins)
ENSP00000258070     -----------------------------------------------------------------------------------------------------------------------------G-----CATGATGCTAAC------T
ENSPTRP00000027601  -----------------------------------------------------------------------------------------------------------------------------G-----GATGCTACACTT------T
ENSMMUP00000024505  -----------------------------------------------------------------------------------------------------------------------------G-----CATGATGCTAAC------T

                    15.. ....|16.. ....|17.. ....|18.. ....|19.. ....|20.
reseq__B3_chimpF4   ACATTTTTGCACCTAGTCCACAAAGCAGGGACATGA-----------------
reseq__B3_humanF16  ACATTTTTGCACCTAGTCCAAAAAGCAGGGACAAGACA---------------
reseq__B3_humanF76  ACATTTTTGCACCTAGTCCACAAAGCAGGGACCAAATA---------------
reseq__B3_humanF64  ACATTTTTGCACCTAGTCCAAAAAGCAGGGACAAGATT---------------
reseq__B3_humanF88  ACATTTTTGCACCTAGTCCAAATAGCAGGGACCCAATC---------------
reseq__B3_humanF52  ACATTTTTGCACCTAGTCCAAAAAGCAGGGACCCACTT---------------
reseq__B3_chimpF28  ACATTTTTGCACCTAGTCAAACAAGCAGGGACCAAAAA---------------
reseq__B3_chimpF52  ACATTTTTGCACCTAGTCCACAAAGCAGGGACATGA-----------------
reseq__B3_chimpF40  ACATTTTTGCACCTAGTCCAAGAAGCAGGGACCTGAAA---------------
reseq__B3_chimpF76  ACATTTTTGCACCTAGTCCCAGAAGCAGGGACCCAAAT---------------
reseq__B3_humanF28  ACATTTTTGCACCTAGTCCAAAAAGCAGGGACCAAAAA---------------
primer_B3           ACATTTTTGCACCTAGTCCACAAAGCAGGGACCTGTGG---------------
reseq__B3_humanF4   ACATTTTTGCACCTAGTCCAAAAAGCAGGGACCCATAG---------------
reseq__B3_humanF40  ACATTTTTGCACCTAGTCCACAAAGCAGGGACCCAACA---------------
reseq__B3_chimpF16  ACATTTTTGCACCTAGTCCACAAAGCAGGGACCCATAC---------------
reseq__B3_chimpF88  ACATTTTTGCACCTAGTCCAAAAAGCAGGGACATGAAA---------------
reseq__B3_chimpF64  ACATTTTTGCACCTAGTCCAAAAAGCAGGGACAAGAAT---------------
# Our alignments (spliced for proteins)
human_dna           ACATTTTTGCACCTAGTCCACAAAGCAGGGACCTGTGGGTGAAGAAGTTAAAA
chimp_dna           ACATTTTTGCACCTAGTCCACAAAGCAGGGACCTGTGGGTGAAGAAGTTAAAA
macaque_dna         ACATTTTTGCACCTAGTCCACAAAGCAGGGACCTGTGGGTGAAGAAGTTAAAA
# Ref.[1] alignments (spliced for proteins)
ENSP00000258070     AC------------AGT-----AAG-A---A---GT---T-AA-AAG----AA
ENSPTRP00000027601  AC------------AGT-----AAG-A---A---GT---T-AA-AAG----AA
ENSMMUP00000024505  AC------------AGT-----AAG-A---A---GT---T-AA-AAG----AA