Resequencing analysis for Gene: TEC
There are 3 sections to this alignment:
- resequencing alignment (unspliced, by construction)
- Our alignments (spliced for coding sequence)
- Alignments of ref. [1] (spliced for coding sequence)
Note that:
- these alignments should be taken in context with whole protein alignment. Spliced alignments may be interrupted by splicing events.
- Putative signal of positive selection is shown in blue.
.... ....|1... ....|2... ....|3... ....|4... ....|5... ....|6... ....|7... ....|8... ....|9... ....|10.. ....|11.. ....|12.. ....|13.. ....|14.. ....|
reseq__B3_chimpF4 TTGAGATCATT-TATT-GGTGTCT-GTAGTACCAAGGG--TTC-----TGGGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF16 ----------TAACTAGAGTGTCTCGTAGTACCAAAGG--TTC-----AGAGCT--AGACAGAAG--AGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF76 -AGATCTTATT-TATTCTGTGTCT-GTAGTACCAAGGG--TTC-----TGTGCT--AGACAAAAT--TGCT-GTG--TCTAATTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAAGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF64 ---ATCTTATATTATTCGGTGTCT-GTAGTACCAAGGGG-TTC-----TGTGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF88 TAGATCTCATT-TATT-GGTGTCT-GTAGTACCAAGGG--TTC-----TGTGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF52 --GATCTTATAATATTCTATGACT-GTAGTACCAAGGG--TTC-----TGTGCT--AGACAAAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_chimpF28 ---------------------TCT-GTAGTACCAATGGGGTTTCCTAGAGGGCTTCGTACAGAAGGTCGCTCGTCGTCCTAAGTCCCTTCTTCCACCAATTTCCATCCTTCTCGTTTTATTTTAGGTC-TTCACGATGCTAACACACTTT
reseq__B3_chimpF52 TTGAGATCATT-TATT-GGTGTCT-GTAGTACCAAGGG--TTC-----TGGGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_chimpF40 -------CTTTTTATTGGGTGTCT-GTAGTACCAAAGGGTTCT-----CAGGCT--CGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_chimpF76 TTGAGATCATT-TATT-GGTGTCT-GTAGTACCAAGGG--TTC-----TGGGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF28 ---------TAATGTT-GGTGTCT-GTAGTACCAAAGG--TTC-----AGAGCT--AGACAGAAG--AGCTCGTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
primer_B3 TGAGAATCATT-TATT-GGTGTCT-GTAGTACCAAGGG--TTC-----TGNGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF4 --------------CGTGTCGTCTCGTAGTACCAAGGGT-TCT-----AGAGCT--AGACAGAAG--AGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_humanF40 ------------TGAGGTGGTCTC-GTAGTACCAAGGG--TTC-----TGTGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_chimpF16 TTGAGATCATT-TATT-GGTGTCA-GTAGTACCAAAGG--TTC-----AGGGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_chimpF88 TTGAGATCATT-TATT-GGTGTCA-GTAGTACCAAGGG--TTC-----AAGGCT--AGACAGAAG--TGCT-GTG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
reseq__B3_chimpF64 -------CTTTTTTATTGGTGTCT-GTAGTACCAAGGG--TTC-----AAGGCT--CGACAGAAG--AGCTCGAG--TCTAAGTCCTCTT---CACCAATT-CCATCTTTT--GTTTTATTTTAGGTTGTTCATGATGCTAACACACTTT
# Our alignments (spliced for proteins)
human_dna -----------------------------------------------------------------------------------------------------------------------------GTTGTTCATGATGCTAACACACTTT
chimp_dna -----------------------------------------------------------------------------------------------------------------------------GTTGTTCATGATGCTAACACACTTT
macaque_dna -----------------------------------------------------------------------------------------------------------------------------GTTGTTCATGATGCTAACACACTTT
# Ref.[1] alignments (spliced for proteins)
ENSP00000258070 -----------------------------------------------------------------------------------------------------------------------------G-----CATGATGCTAAC------T
ENSPTRP00000027601 -----------------------------------------------------------------------------------------------------------------------------G-----GATGCTACACTT------T
ENSMMUP00000024505 -----------------------------------------------------------------------------------------------------------------------------G-----CATGATGCTAAC------T
15.. ....|16.. ....|17.. ....|18.. ....|19.. ....|20.
reseq__B3_chimpF4 ACATTTTTGCACCTAGTCCACAAAGCAGGGACATGA-----------------
reseq__B3_humanF16 ACATTTTTGCACCTAGTCCAAAAAGCAGGGACAAGACA---------------
reseq__B3_humanF76 ACATTTTTGCACCTAGTCCACAAAGCAGGGACCAAATA---------------
reseq__B3_humanF64 ACATTTTTGCACCTAGTCCAAAAAGCAGGGACAAGATT---------------
reseq__B3_humanF88 ACATTTTTGCACCTAGTCCAAATAGCAGGGACCCAATC---------------
reseq__B3_humanF52 ACATTTTTGCACCTAGTCCAAAAAGCAGGGACCCACTT---------------
reseq__B3_chimpF28 ACATTTTTGCACCTAGTCAAACAAGCAGGGACCAAAAA---------------
reseq__B3_chimpF52 ACATTTTTGCACCTAGTCCACAAAGCAGGGACATGA-----------------
reseq__B3_chimpF40 ACATTTTTGCACCTAGTCCAAGAAGCAGGGACCTGAAA---------------
reseq__B3_chimpF76 ACATTTTTGCACCTAGTCCCAGAAGCAGGGACCCAAAT---------------
reseq__B3_humanF28 ACATTTTTGCACCTAGTCCAAAAAGCAGGGACCAAAAA---------------
primer_B3 ACATTTTTGCACCTAGTCCACAAAGCAGGGACCTGTGG---------------
reseq__B3_humanF4 ACATTTTTGCACCTAGTCCAAAAAGCAGGGACCCATAG---------------
reseq__B3_humanF40 ACATTTTTGCACCTAGTCCACAAAGCAGGGACCCAACA---------------
reseq__B3_chimpF16 ACATTTTTGCACCTAGTCCACAAAGCAGGGACCCATAC---------------
reseq__B3_chimpF88 ACATTTTTGCACCTAGTCCAAAAAGCAGGGACATGAAA---------------
reseq__B3_chimpF64 ACATTTTTGCACCTAGTCCAAAAAGCAGGGACAAGAAT---------------
# Our alignments (spliced for proteins)
human_dna ACATTTTTGCACCTAGTCCACAAAGCAGGGACCTGTGGGTGAAGAAGTTAAAA
chimp_dna ACATTTTTGCACCTAGTCCACAAAGCAGGGACCTGTGGGTGAAGAAGTTAAAA
macaque_dna ACATTTTTGCACCTAGTCCACAAAGCAGGGACCTGTGGGTGAAGAAGTTAAAA
# Ref.[1] alignments (spliced for proteins)
ENSP00000258070 AC------------AGT-----AAG-A---A---GT---T-AA-AAG----AA
ENSPTRP00000027601 AC------------AGT-----AAG-A---A---GT---T-AA-AAG----AA
ENSMMUP00000024505 AC------------AGT-----AAG-A---A---GT---T-AA-AAG----AA