Resequencing analysis for Gene: NP_115923.1

There are 3 sections to this alignment:
  - resequencing alignment (unspliced, by construction)
  - Our alignments (spliced for coding sequence)
  - Alignments of ref. [1] (spliced for coding sequence)

Note that:
  - these alignments should be taken in context with whole protein alignment. Spliced alignments may be interrupted by splicing events.
  - Putative signal of positive selection is shown in blue.

                    .... ....|1... ....|2... ....|3... ....|4... ....|5... ....|6... ....|7... ....|8... ....|9... ....|10.. ....|11.. ....|12.. ....|13.. ....|14.. ....|
reseq__B1_humanX26  --CCCCTTCCCCCTTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGACGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
reseq__B1_chimpX26  --CCTTCCCCCCCCTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGATGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
reseq__B1_humanX2   --CCCCTTCCCTCCTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGACGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
reseq__B1_humanX38  --CCCTTCCCCCCCTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGACGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
reseq__B1_chimpX50  --CCCTTCCCCCCCTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGATGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
reseq__B1_chimpX14  --CCCTTCCCCCCCTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGATGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
reseq__B1_chimpX38  --CCCTTCCCCCCCTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGATGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
reseq__B1_humanX74  TCCCCTTCCCCCCTTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGACGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
reseq__B1_chimpX86  --CCCTTCCCCCCCTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGATGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
reseq__B1_humanX50  --CCCCTTCCCCCTTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGACGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
reseq__B1_humanX86  ----------------A-------------------------------------------------------------------------------------------------------------------------------------
primer_B1           --CCCCTTCCCCCTTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGANGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
reseq__B1_humanX62  --CCCCTTCCCCCCTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGACGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
reseq__B1_humanX14  --------CCCCCCTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGACGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
reseq__B1_chimpX62  --CCCCTTCCCCCCTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGATGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
reseq__B1_chimpX2   --CCTTCCTCCCCCTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGATGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
reseq__B1_chimpX74  --CCCTTCCCCCCCTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGATGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
# Our alignments (spliced for proteins)
human_dna           --CCCCTTCCCCCTTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGACGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
chimp_dna           --CCCCTTCCCCCTTTAGTGCCTGCTGCCTTACCCCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGATGTGCCGACCTCAGGAGTGGCACCAGACGGGATCCCAGAGCGGCCCAAGGAGCCGAGCAGCCTGCTGGGAGGAG
macaque_dna         --CCCCTTCCCCCTTTAGTGCCTGCTGCCTTACCTCTGCAGGGAGCCTCTCCTCCTGCAGCCAGTGCAGATGCAGACGTGCTGACCTCGGGAGTGGCACCAGCAGGGATCCCAGACCGGCCTAAGGAGCCGAGCAGCCTGCTGGGAGGAG
# Ref.[1] alignments (spliced for proteins)
ENSP00000255992     -------TC-----------CCTGCTGCCTTA----------------------------------------------------------------------------------------------------------------------
ENSPTRP00000033989  -------TC-----------GCTGCCTTACTG----------------------------------------------------------------------------------------------------------------------
ENSMMUP00000022569  -------TC-----------CCTGCTGCCTTA----------------------------------------------------------------------------------------------------------------------

                    15.. ....|16.. ....|17.. ....|18.. ....|19.. ....|20.. ....|21.. ....|22.. 
reseq__B1_humanX26  TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGG-CGCAT-GATGCC-
reseq__B1_chimpX26  TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGT--GCAT-GATGCTT
reseq__B1_humanX2   TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGG-CGCAT-GATGCT-
reseq__B1_humanX38  TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGG-CGCAT-GATGCT-
reseq__B1_chimpX50  TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGG-CGCAT-GATGCA-
reseq__B1_chimpX14  TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGG-CGCAT-GATGTT-
reseq__B1_chimpX38  TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGG-CGCAT-GATGAC-
reseq__B1_humanX74  TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGT-CGCAT-GAGGGT-
reseq__B1_chimpX86  TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGG-CGCAT-GCTGAC-
reseq__B1_humanX50  TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGTGGAGCACAGGGACCCGAGATGGGGG-CGCAT-GAAGCT-
reseq__B1_humanX86  ---------------------------------------------------------------------------
primer_B1           TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGGGCGCATTGATG---
reseq__B1_humanX62  TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGG-CGCAT-GATGAC-
reseq__B1_humanX14  TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGG-CGCAT-GATGCC-
reseq__B1_chimpX62  TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGG-CGCAT-GATGGC-
reseq__B1_chimpX2   TGCAGAGGGCCCTCCTAGGGAAGAACTGTGGGGTGGGGAGCACTGGGACCCGAGATGGGGG-CGCAATGAT----
reseq__B1_chimpX74  TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGG-CGCAT-GATGCT-
# Our alignments (spliced for proteins)
human_dna           TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGGGC------------
chimp_dna           TGCAGAGGGCCCTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCGAGATGGGGGGC------------
macaque_dna         TGCAGAGGGCACTCC--AGGAAGAACTGTGGGGTGGGGAGCACAGGGACCCAAGGTGGGGGGC------------
# Ref.[1] alignments (spliced for proteins)
ENSP00000255992     ---------------------------------------------------------------------------
ENSPTRP00000033989  ---------------------------------------------------------------------------
ENSMMUP00000022569  ---------------------------------------------------------------------------