risk: 1.5

SCRATCH: outfiles

indivname: indiv1.dat

snpname: snp.dat

genotypename: genodata

badsnpname: badsnps

tlreest: YES

seed: 1011

splittau: YES

fancyxtheta: YES

output: SCRATCH/act.out

trashdir: /cvar/popgen01/junk

checkit: NO

details: NO

numburn: 100

numiters: 200

emiter: 30

dotoysim: NO

cleaninit: YES

reestiter: 5

thetafilename: SCRATCH/theta.out

lambdafilename: SCRATCH/lambda.out

freqfilename: SCRATCH/freq.out

indoutfilename: SCRATCH/ind.out

snpoutfilename: SCRATCH/snp.out

ethnicfilename: SCRATCH/ethnic.out

##noxdata: 0

##fakespacing: 0.01

##thxpars: 40.0 1.0 10.0

##thpars: 1.0 5.0

##lampars: 1.0 0.1

##lamxpars: 1.0 0.1

##markersim: 200

##simnumindivs: 1000

##risksim: 1.0

##tauscal: 100 100

##wrisk: 1.0

##lrisk: -1.0

##controlrisk: 1.0

##risk2: 2.25

##taulsdev: 0.5

##taulmean: 2.0

##allmale: 0

##allcases: 0

##usecontrols: 1

##pubfmodern: 0

##pubxname: SCRATCH/gamma.out

##genotoyoutfilename: SCRATCH/genotoy.out

##indtoyoutfilename: SCRATCH/indtoy.out

##unknowngender: U