ANCESTRYMAP
SOFTWARE DOCUMENTATION
1.
Overview of Admixture Mapping
2.1 Introduction
2.2 Limitations
2.3 Applications
of the program
2.4 Comparison
to other mapping approaches and guidelines for optimal study design
3.2 Description of the
parameter file
4. Format
of the input data files
6. Interpreting
and monitoring the output
6.1 Overview
6.2 Output
Details
6.2.1 Output Details with
details, checkit = NO and finite iterations
6.2.2 Output Details with
details = YES, checkit = NO and finite iterations
6.2.3 Output Details with
details, checkit = YES and no iterations
6.2.4 Output Details with details,
checkit = YES and finite iterations
6.3 Description
of output files
7. Enhancements in the version 2.0
8.1 Overview
8.2 Setup of Runs
8.3 Output Details
10.1 Download
instructions for the program
10.2 Running
the example files
10.3 Running
user specific data
10.4 Building
your own executable from source code
11. Simulations
13. Tutorial
14. Description of the auxiliary package: Cntmono
15. Description of the auxiliary package: Getpars
17. Bibliography
19. Appendix A: Expert use parameters
20. Appendix B: Version 2.0 new parameters