Cntmono Tutorial
To
run cntmono on your data, you first need to create
the following files:
Individual file: List of all the parental samples of
populations A and B that one would like to include in the analysis
Marker file: List of markers (same format as /ancestrymap/examples/snps)
Genotype file: Genotype data for the parental samples
of populations A and B.
Aglistname: List of
ethnicities that one would like to classify as population A (same format as: /ancestrymap/examples/aflist)
Eglistname: list of
ethnicities that one would like to classify as population B (same format as: /ancestrymap/examples/eurlist)
Next make a copy of the /ancestrymap/examples/parmono
file, and specify the
names of the various files in there.