Publications & Patents

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Patents

The patents were offered for sale at Ocean Tomo's October 2008 Auction in Chicago, Illinois. In 2009 they were sold (not announced yet). Luciano retains the right to use the patents. Ocean Tomo Website: http://www.oceantomoauctions.com/OTA_Catalogue_Lot.asp?eventid=102008&Lot=45 Patent Lot description: http://www.oceantomoauctions.com/catalogue_files/102008/Telemedical_Information_Management_Systems_Lot_45.pdf

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Publications

2009

  • Issues in Learning an Ontology from Text. Christopher Brewster, Simon Jupp, Joanne Luciano, David Shotton, Robert D Stevens and Ziqi Zhang, BMC Bioinformatics 2009, 10 (Suppl 5):S1doi:10.1186/1471-2105-10-S5-S1 http://www.biomedcentral.com/1471-2105/10/S5/S1. Published: 6 May 2009.

In preparation:

  • InfluenzO: An Influenza Metadata Ontology for Biomedical Research and Biosurveillance. Joanne Luciano1, Lynn Schriml, Meredith Keybl, Eric Bortz, Torsten Staab, David Spiro, Marc Colosimo, Lynette Hirschman, Richard H. Scheuermann, R. Burke Squires. Keywords: Biosecurity, Influenza, Flu, Ontology, Metadata, Biosurveillance, Bioforensics, Disease Monitoring.
  • Ontology Evaluation and Reuse: A Science and Engineering Approach
  • Ontology Summit 2007 - Report of NIST Meeting

2008

  • 2008 Habitat-Lite: A GSC Case Study Based on Free Text Terms for Environmental Metadata. Lynette Hirschman, Cheryl Clark, K. Bretonnel Cohen, Scott Mardis, Joanne Luciano, Renzo Kottmann, James Cole, Victor Markowitz, Nikos Kyrpides, Norman Morrison, Lynn M. Schriml, Dawn Field, and the Novo Project OMICS: A Journal of Integrative Biology. June 2008, 12(2): 129-136. http://www.liebertonline.com/doi/pdfplus/10.1089/omi.2008.0016
  • 2008 Issues in learning an ontology from text. Christopher Brewster, Simon Jupp, Joanne Luciano, David Shotton Robert Stevens, and Ziqi Zhang. Bio-Ontologies 2008: Knowledge ion Biology, ISMB 2008, Toronto, Canada. Phillip Lord, Nigam Shah, Susanna-Assunta Sansone, Matthew Cockerill, Editors. pages 9-12. http://www.bio-ontologies.org.uk/download/Bio-Ontologies2008.pdf

2007

  • 2007 Alan Ruttenberg, Tim Clark, William Bug, Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn T Wong, Elizabeth Wu, Davide Zaccagnini1, Tonya Hongsermeier, Eric Neumann, Ivan Herman and Kei-Hoi Cheung. Advancing translational research with the Semantic Web. BMC Bioinformatics 2007, 8(Suppl 3):S2 http://www.biomedcentral.com/1471-2105/8/S3/S2
  • 2007 Matthias Samwald, William Bug, Jonathan Rees, Chris Mungall, John Barkley, Ray Hookway, Huajun Chen, Susie Stephens, Olivier Bodenreider, Kei-Hoi Cheung, Paolo Ciccarese, Tim Clark, Donald W Doherty, Kerstin Forsberg, Vipul Kashyap, June Kinoshita, Joanne Luciano, M Scott Marshall, Eric Neumann, Eric Prud'hommeaux, Daniel Rubin, Michael Travers, Gwen Wong, Elizabeth Wu, Alan Ruttenberg, The Semantic Web Health Care and Life Sciences Interest Group work in progress: A large scale, OBO inspired, repository of biological knowledge based on Semantic Web technologies. Bio-Ontologies SIG Workshop 2007 Poster Abstract: http://bio-ontologies.man.ac.uk/abstracts.php
  • 2007 Vipul Kashyap, Kei-Hoi Cheung, Don Doherty, Matthias Samwald, M. Scott Marshall, Joanne Luciano, Susie Stephens, Ivan Herman and Ray Hookway, An Ontology-based approach for Data Integration - An Application in Biomedical Research, Book Chapter in Cardoso, J., Hepp, M., Lytras, M. (Eds.) Real-world Applications of Semantic Web Technology and Ontologies, Springer 2007. Hardcover ISBN-10: 0-387-48530-9, ISBN-13: 978-0-387-48530-0 http://empwr.org/2007-Chapter5.pdf

2006

2005

  • 2005 Ruttenberg, AR, Rees, JR and Luciano, JS. Experience Using OWL DL for the Exchange of Biological Pathway Information For the workshop 2005 OWL: Experiences and Directions, Galway, Ireland Nov. 11-12 2005 (available at www.webont.org/owled/2005/sub37.pdf)

1993-1998

  • 1998 Rubin, Mark A., Cohen, Michael A., Luciano, Joanne S., and Samson, Jacqueline A. "Can we predict the outcome of treatment for depression?" IEEE Control Systems Society Technical Committee on Intelligent Control Intelligent Control Newsletter 98-3 (March 27, 1998) http://pami.uwaterloo.ca/~karray/newsl5.html
  • 1997 Luciano, J., Cohen, M. Samson, J. "Predictive Medicine: Initial Symptoms May Determine Outcome in Clinically Treated Depressions," 1997 International Conference on Neural Networks (ICNN'97), IEEE, Piscataway, NJ, vol. I, pp71-80.
  • 1996 Luciano, J.S. Neural Network Modeling of Unipolar Depression: Patterns of Recovery and Prediction of Outcome, Ph.D. Thesis, Boston University. To order a copy http://tinyurl.com/cpxwk8.
  • 1996 Luciano, J., Cohen, M. Samson, J. ”Neural Network Modeling of Unipolar Depression,” Neural Modeling of Cognitive and Brain Disorders, World Scientific Publishing Company, eds. J. Reggia and E. Ruppin and R. Berndt. Book cover; chapter pp 469-483.
  • 1994 Luciano, J., Cohen, M., Samson, J. and Hagan, P., “A Prototype and Nonlinear Neural Network Approach to Subtyping Depressive Illness by Initial Input Data and Treatment Outcome,” Proceedings of the Irish Neural Network Conference 1994, Dublin, Ireland
  • 1994 Luciano, J., Cohen, M., Samson, J. “A Neural Network Model of Unipolar Depression,” Proceedings of the Irish Neural Network Conference 1994, Dublin, Ireland.
  • 1993 Schiller, Ilya, Luciano, Joanne S., Draper, James S. "Flock autonomy for unmanned vehicles." Proc. SPIE Vol. 1831, p. 45-51, Mobile Robots VII, William J. Wolfe, Wendell H. Chun, Eds. (SPIE Homepage) Abstract Copyright: (c) 1993 SPIE--The International Society for Optical Engineering. http://adsabs.harvard.edu/abs/1993SPIE.1831...45S
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Presentations and Posters

2009


2008

  • 2008 July Poster T13 Utilizing the Ontology of Biomedical Investigations (OBI) for Influenza Sequence and Surveillance Analysis. Richard Squires- UT Southwestern Medical Center at Dallas, Richard Scheuermann (UT Southwestern, Pathology); Lynn Schriml (University of Maryland School of Medicine, Institute for Genome Sciences); Eric Bortz (Mount Sinai School of Medicine, Microbiology); Torsten Staab (Los Alamos National Laboratory, Applied Engineering and Technology ); Marc Colosimo (Mitre Corporation, Information Technology); Joanne Luciano (The MITRE Corporation, Information Technology);
  • 2008 BioOntologies [Poster 3] Joanne Luciano, Lynn Schriml, Burke Squires and Richard Scheuermann, The Influenza Infectious Disease Ontology (I-IDO). (http://www.bio-ontologies.org.uk/download/Bio-Ontologies2008.pdf) The 11th Annual Bio-Ontologies Meeting Organized by: Phillip Lord, Newcastle University, Nigam Shah, Stanford University, Susanna-Assunta Sansone, EMBL-EBI and Matthew Cockerill, BioMed Central, July 20, 2008, Colocated with ISMB 2008, Toronto, Canada
  • 2008 Luciano, Joanne S. and Stevens, Robert D. OWL: PAX of mind or the AX? Experiences of Using OWL in the Development of BioPAX For the workshop OWL: Experiences and Directions, Gaithersburg, MD, USA, April 1-2, 2008. http://www.EMPWR.org/OWL-ED-2008-Luciano.pdf
  • 2008 Lessons Learnt in Ontology Construction, Hunter Lab, University of Colorado Health Sciences Center, January 14, 2008.

2006

  • W3C Semantic web health care and life science F2F, Boston, MA Jan 2006
  • Pacific Symposium on Biocomputing, Maui, Hawaii, Jan 2006

2005

  • Experience Using OWL DL for the Exchange of Biological Pathway Information For the workshop 2005 OWL: Experiences and Directions, Galway, Ireland Nov. 11-12 2005, Dublin, Ireland
  • BioPAX Technical Workshop, Tokyo Japan, November 17, 2005: Review of the BioPAX Ontology: http://tinyurl.com/go94r (presented by Matthew Horridge)
  • Drug Discovery Technology Technical Scientific Workshop Series. Workshop 10: Systems Biology: Can it Deliver the Magic Bullet? Boston, August 10, 2005
  • Pasteur Institute, Paris France, July 2005
  • Biopathways Semantic Aggregation, Integration and Inference, Tutorial, ISMB Detroit Michigan, June 2005
  • Oracal Life Science Users Group (BioIT), Boston, MA, May 2005 http://www.olsug.org/Presentations/May_2005/Workshops/RDF_Workshop05.pdf
  • W3C Life Science Meeting, BioIT, Boston, MA, May 2005
  • Molecular Medicine Tri Confrence (poster), San Francisco, CA April 2005
  • DARPA Workshop on Computable Semantics for Systems Biology (Invited Speaker), Arlington, VA, March 3-4, 2005

2004

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Other

(not complete)



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